FvH4_2g28081

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004523
Physical Location & Seq
Reverse (-)
22143387 .. 22145299
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28081.t1

Sequence Viewer

Length: 1110 bp
ATGTCTACTAAGACAATGAGTCTTACTGAATTTGTGGATCAATATGACAAACAGGCAGAACAAATGCGTTCAAGTGAATTGGAAGAGACTTTTCGATGCAATAATGGAATACCTTCGAGGGCTGCAAAAAGTAGTGGAATTAAGAAGCAAGCTGGTATGGTCTACACCCGAAAAATTTACAATTTATTTGAGTTTGAATTTATTGCTAGCTTAGCAGTGAAGATGGAGGAAGTTGGAAATGATGGAACACTGCAAAAATTTGAACTTAATGAGGAGGGCCATAAAAGAGTGTACATTGTCCAATTCAATTCTTCGAATATGACCATATGTTGTATTTGTCAGATGTATGAATCTAAGGGTTGGTTATGTCGTCATGCTTTGAGGGTGCTAAATGTGAAAAATGTTACTCAAATTCCAGCACAGTATATTCTGAAGAGATGCACAAAAGATGCAAAGAAAGGAGTAGAGGAAAACAATGTAGAACTACAGGTCAAGGAGAAATCCACTGTGACATTGCGCAGGAATTCTTTGATGCGAAAAGCTTATGGTATAATTAGTTCCAGTGTCAATACTTCTAATGCTGGTGGTAACAAGAATGAAACTTTATTTGATGAACCACCAATACTAAATCCAGTAGGAGTGTGGCCGAAAGGCATGACTAATAAAAGAATGAAAGCAGCAATGGAGAAGAAGCAAAATAAAAAAGCACCAAAAGGTAGAGGTTCTGGAAAAATAAAGCCTCCAAACAATGGAGCGCCCTCACGTGCATCACTGCCTGTAGTCCATAATTCAGACTTGCTTCACCAATTTGGAGCATCGAGTGGAACATATCCTATTAACCAGCAATTTTCAGCTATGAGCTTTCCGACAACTAATGTTTATGCTCCTTACACTTTATATAATCAGAATCCTACTTTTGTGTCGCCATCTTCTCAACACAATTTAACATATGCAAATATGCATCAAGCCGATATCTATTTCACACAATTGAATCAGAATTCCACCCCAAGGATTGCTACCAATTTGATTAGTCAAATTCCTCAACAGAGCCAGGAATTTTATTCAAATAGTTACGAGCAACTATCTGATAGAGGAAAAAAAGTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

370

Amino Acids

41.59

Weight (kDa)

9.52

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 100 - 134 3.9e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 749
AccI GTMKAC 2 cut(s) 5, 162
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 644
AcsI RAATTY 9 cut(s) 29, 174, 197, 257, 411, 523, 997, 1035, 1055
AcuI CTGAAG 1 cut(s) 452
AcvI CACGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 749, 1008
AgsI TTSAA 6 cut(s) 72, 197, 263, 307, 991, 1065
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 1050
AluBI AGCT 5 cut(s) 152, 210, 542, 854, 861
AluI AGCT 5 cut(s) 152, 210, 542, 854, 861
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 277, 644
ApeKI GCWGC 2 cut(s) 122, 677
ApoI RAATTY 9 cut(s) 29, 174, 197, 257, 411, 523, 997, 1035, 1055
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 2 cut(s) 519, 757
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 794
AsuII TTCGAA 1 cut(s) 314
AsuNHI GCTAGC 1 cut(s) 206
BbrPI CACGTG 1 cut(s) 764
BbvI GCAGC 2 cut(s) 109, 689
BccI CCATC 3 cut(s) 217, 236, 934
BciT130I CCWGG 1 cut(s) 1052
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 2 cut(s) 485, 777
BfoI RGCGCY 1 cut(s) 758
BisI GCNGC 2 cut(s) 123, 678
BlpI GCTNAGC 1 cut(s) 211
BlsI GCNGC 2 cut(s) 124, 679
Bme1390I CCNGG 1 cut(s) 1052
BmeRI GACNNNNNGTC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 1052
BmsI GCATC 7 cut(s) 86, 428, 439, 522, 776, 824, 970
BmtI GCTAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 314
BsaAI YACGTR 1 cut(s) 764
BsaJI CCNNGG 1 cut(s) 1007
Bsc4I CCNNNNNNNGG 2 cut(s) 749, 1008
Bse1I ACTGG 2 cut(s) 561, 632
Bse3DI GCAATG 2 cut(s) 512, 687
BseBI CCWGG 1 cut(s) 1052
BseDI CCNNGG 1 cut(s) 1007
BseLI CCNNNNNNNGG 2 cut(s) 749, 1008
BseMI GCAATG 2 cut(s) 512, 687
BseNI ACTGG 2 cut(s) 561, 632
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 109, 689
BshFI GGCC 2 cut(s) 279, 646
BslI CCNNNNNNNGG 2 cut(s) 749, 1008
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 279, 646
Bsp119I TTCGAA 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 1 cut(s) 37
Bsp1720I GCTNAGC 1 cut(s) 211
BspANI GGCC 2 cut(s) 279, 646
BspOI GCTAGC 1 cut(s) 210
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 512, 687
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 2 cut(s) 561, 632
BssECI CCNNGG 1 cut(s) 1007
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 1007
Bst2UI CCWGG 1 cut(s) 1052
Bst4CI ACNGT 2 cut(s) 423, 508
Bst6I CTCTTC 2 cut(s) 78, 428
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 150, 208
BstDEI CTNAG 3 cut(s) 9, 211, 354
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 2 cut(s) 519, 757
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 1052
BstSCI CCNGG 1 cut(s) 1050
BstSFI CTRYAG 2 cut(s) 485, 777
BstV1I GCAGC 2 cut(s) 109, 689
BsuRI GGCC 2 cut(s) 279, 646
BtsI GCAGTG 3 cut(s) 222, 248, 770
BtsIMutI CAGTG 5 cut(s) 222, 248, 504, 568, 770
Cac8I GCNNGC 2 cut(s) 150, 208
CfoI GCGC 2 cut(s) 519, 757
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 374, 655
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 9, 211, 354
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 644
Eam1104I CTCTTC 2 cut(s) 78, 428
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 2 cut(s) 78, 428
Eco130I CCWWGG 1 cut(s) 1007
Eco32I GATATC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 452
Eco72I CACGTG 1 cut(s) 764
EcoRI GAATTC 2 cut(s) 523, 997
EcoRII CCWGG 1 cut(s) 1050
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 1007
EcoT22I ATGCAT 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 1007
FaeI CATG 2 cut(s) 377, 658
FatI CATG 2 cut(s) 373, 654
FauNDI CATATG 2 cut(s) 326, 949
FblI GTMKAC 2 cut(s) 5, 162
Fnu4HI GCNGC 2 cut(s) 123, 678
Fsp4HI GCNGC 2 cut(s) 123, 678
FspBI CTAG 1 cut(s) 207
FspI TGCGCA 1 cut(s) 518
GlaI GCGC 2 cut(s) 518, 756
GluI GCNGC 2 cut(s) 123, 678
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 2 cut(s) 279, 646
HhaI GCGC 2 cut(s) 519, 757
Hin1II CATG 2 cut(s) 377, 658
Hin6I GCGC 2 cut(s) 517, 755
HinP1I GCGC 2 cut(s) 517, 755
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 4 cut(s) 19, 350, 907, 991
HphI GGTGA 1 cut(s) 794
Hpy166II GTNNAC 3 cut(s) 6, 163, 292
Hpy188I TCNGA 7 cut(s) 342, 432, 793, 867, 906, 996, 1087
Hpy188III TCNNGA 1 cut(s) 726
Hpy8I GTNNAC 3 cut(s) 6, 163, 292
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 423, 508
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 8 cut(s) 99, 125, 253, 441, 452, 767, 953, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 3 cut(s) 9, 211, 354
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 2 cut(s) 377, 658
HspAI GCGC 2 cut(s) 517, 755
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 3 cut(s) 752, 812, 889
Lsp1109I GCAGC 2 cut(s) 109, 689
LweI GCATC 7 cut(s) 86, 428, 439, 522, 776, 824, 970
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 4 cut(s) 403, 508, 587, 1070
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 6 cut(s) 95, 232, 303, 445, 700, 921
MfeI CAATTG 1 cut(s) 986
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 214, 890
Mph1103I ATGCAT 1 cut(s) 963
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 4 cut(s) 141, 267, 837, 944
MspR9I CCNGG 1 cut(s) 1052
MunI CAATTG 1 cut(s) 986
MvaI CCWGG 1 cut(s) 1052
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeI CATATG 2 cut(s) 326, 949
NdeII GATC 1 cut(s) 37
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 377, 658
NmuCI GTSAC 1 cut(s) 508
NsbI TGCGCA 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 963
NspV TTCGAA 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 3 cut(s) 350, 907, 991
PflMI CCANNNNNTGG 1 cut(s) 749
PkrI GCNGC 2 cut(s) 124, 679
PleI GAGTC 1 cut(s) 27
PmaCI CACGTG 1 cut(s) 764
PmlI CACGTG 1 cut(s) 764
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 764
Psp6I CCWGG 1 cut(s) 1050
PspCI CACGTG 1 cut(s) 764
PspGI CCWGG 1 cut(s) 1050
PspPI GGNCC 1 cut(s) 277
PsrI GAACNNNNNNTAC 4 cut(s) 541, 573, 606, 638
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SaqAI TTAA 4 cut(s) 141, 267, 837, 944
SatI GCNGC 2 cut(s) 123, 678
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 1052
SfaNI GCATC 7 cut(s) 86, 428, 439, 522, 776, 824, 970
SfcI CTRYAG 2 cut(s) 485, 777
SfuI TTCGAA 1 cut(s) 314
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 1050
StyI CCWWGG 1 cut(s) 1007
TaaI ACNGT 2 cut(s) 423, 508
TaiI ACGT 1 cut(s) 766
TaqI TCGA 4 cut(s) 94, 116, 314, 818
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 3 cut(s) 350, 907, 991
Tru1I TTAA 4 cut(s) 141, 267, 837, 944
Tru9I TTAA 4 cut(s) 141, 267, 837, 944
TscAI CASTG 5 cut(s) 222, 255, 511, 568, 777
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 2 cut(s) 122, 677
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 363, 612, 627, 686
TspRI CASTG 5 cut(s) 222, 255, 511, 568, 777
Van91I CCANNNNNTGG 1 cut(s) 749
XapI RAATTY 9 cut(s) 29, 174, 197, 257, 411, 523, 997, 1035, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XmiI GTMKAC 2 cut(s) 5, 162
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.