Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

32885088 .. 32886396

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38531.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTTCAATAAGTGTCTTTATGCTTGTGAGACAGTGGAAGAATTTCAGTCTAAATGGGATGAGTTACTTATAACATTTAATGTCACAGAGAATTCTTGGTTGAAGAAGCTCTATACACTACGGGAAAAATGGTGTGCAGCATTCAGCTTAGATACTTTTTCTGCTGGAATTCAATCTTCACAAAGAAGTGAGAGCACAAATAGAGTATTCCATCATATATCTGCTGCAAGAATGAGGCTTATTGAATTTGTTCAACACTATGATAAGCAATTAGAAGCCACACGCTCAAGTGACTTAGAAGAGACTTTTCGTTGCACAAATGGTATACCTTCTTCTGCTAAGAGGAGCACTAAACTACTATATCATGCAGGTGAAGTTTATTCGAGAAAAGTTTATAACTTATTTGGGACTGAGTTTGCCGCTAGCATGGCATTCAAGATGGTTGAAGTTGATACTAATGAAACAGTACATACTTTTGAATTGAGTCGGGAGGGGCGCAATATCATTTATGTTGTGAAGGTGAACTCTTCAAATGACACAATCACATGTAGCTGCAAGAAGTTTGAATCTAAGGGATTGTTATGTCGTCAGGCTCTAAGGGTATTGAATGTGAGGAATGTTACTAAGATACCACCGCAATATGTACTGAAGCGTTGGAAAAAGGATGCAAAATCAGAAATTGGGGCACAAGAGCATGGAGCATTATTACAACAAAAGGACAAACCATCAATTGCATTGCGTCGAAATAATATGATTCGAAAAGCTTATGACATATTGAGCACTGCTGCATTGACAGAGAAAGGTTGTAAAATCGCAATGGAAAAGTTGAAGGAGATGAAGGAGTTAATTGAAAAGGATGAGGCAGAGTCAAATGGATCTGGTAACAAAGAAAACAATGAGACTTTGAATGATGATAGTATTAGTGATGATAATGAAAGTGATCATCAAGTTGATAATACACCAATATTGGATCCTCCATGTGCAAAGACAAAAGGGATGAGTAATGAAAGATGGAAATCAACAGTGGAGAAGCAAAACAAGAATGCTTCTAAGAATACAGTGTCATCTAGTAAAAAAGGTGACAGTGAGAAGCAACAAAAAGGGAGGTCATCAAAAGATCCATTCTCATCTAGTAAGAAGGTTTGCACTCGATCGTCCACCATTAATGTGCATCCATGTTTGCCTCCATCTAATGAGGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

402

Amino Acids

45.46

Weight (kDa)

8.93

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	71, 396
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	2 cut(s)	420, 635
AclWI	GGATC	4 cut(s)	883, 965, 978, 1112
AcsI	RAATTY	4 cut(s)	41, 91, 168, 245
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	468, 645
AflIII	ACRYGT	1 cut(s)	545
AluBI	AGCT	4 cut(s)	109, 147, 552, 764
AluI	AGCT	4 cut(s)	109, 147, 552, 764
Alw21I	GWGCWC	3 cut(s)	197, 350, 782
Alw26I	GTCTC	3 cut(s)	23, 296, 893
AlwI	GGATC	4 cut(s)	883, 965, 978, 1112
ApeKI	GCWGC	4 cut(s)	137, 224, 552, 785
ApoI	RAATTY	4 cut(s)	41, 91, 168, 245
AseI	ATTAAT	1 cut(s)	1164
Asp700I	GAANNNNTTC	2 cut(s)	42, 249
AspLEI	GCGC	1 cut(s)	498
AsuHPI	GGTGA	3 cut(s)	383, 532, 1091
AsuII	TTCGAA	1 cut(s)	757
AsuNHI	GCTAGC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	688
BamHI	GGATCC	1 cut(s)	970
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
Bbv12I	GWGCWC	3 cut(s)	197, 350, 782
BbvI	GCAGC	4 cut(s)	149, 211, 539, 772
BccI	CCATC	5 cut(s)	219, 433, 733, 1005, 1195
BclI	TGATCA	1 cut(s)	940
BcoDI	GTCTC	3 cut(s)	23, 296, 893
BfaI	CTAG	3 cut(s)	423, 1068, 1131
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	5 cut(s)	138, 225, 420, 553, 786
BlsI	GCNGC	5 cut(s)	139, 226, 421, 554, 787
BmiI	GGNNCC	1 cut(s)	972
BmsI	GCATC	2 cut(s)	655, 1180
BmtI	GCTAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	1015
Bse3DI	GCAATG	2 cut(s)	734, 822
Bse8I	GATNNNNATC	1 cut(s)	1015
BseGI	GGATG	5 cut(s)	64, 670, 862, 1002, 1171
BseJI	GATNNNNATC	1 cut(s)	1015
BseMI	GCAATG	2 cut(s)	734, 822
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	4 cut(s)	149, 211, 539, 772
BsgI	GTGCAG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	1154
BsiEI	CGRYCG	1 cut(s)	1154
BsiHKAI	GWGCWC	3 cut(s)	197, 350, 782
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	3 cut(s)	23, 296, 893
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	3 cut(s)	140, 431, 1048
Bsp119I	TTCGAA	1 cut(s)	757
Bsp1286I	GDGCHC	4 cut(s)	197, 350, 688, 782
Bsp143I	GATC	5 cut(s)	875, 940, 970, 1117, 1151
BspACI	CCGC	2 cut(s)	420, 635
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	972
BspMI	ACCTGC	1 cut(s)	359
BspOI	GCTAGC	1 cut(s)	426
BspPI	GGATC	4 cut(s)	883, 965, 978, 1112
BspT104I	TTCGAA	1 cut(s)	757
BsrDI	GCAATG	2 cut(s)	734, 822
BssMI	GATC	5 cut(s)	875, 940, 970, 1117, 1151
BssNAI	GTATAC	1 cut(s)	326
Bst1107I	GTATAC	1 cut(s)	326
Bst4CI	ACNGT	5 cut(s)	34, 466, 1024, 1060, 1085
Bst6I	CTCTTC	2 cut(s)	294, 532
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	8 cut(s)	148, 295, 339, 411, 570, 596, 624, 1050
BstF5I	GGATG	5 cut(s)	64, 670, 862, 1002, 1171
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	5 cut(s)	878, 943, 973, 1120, 1154
BstMAI	GTCTC	3 cut(s)	23, 296, 893
BstMBI	GATC	5 cut(s)	875, 940, 970, 1117, 1151
BstMCI	CGRYCG	1 cut(s)	1154
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	4 cut(s)	149, 211, 539, 772
BstX2I	RGATCY	3 cut(s)	875, 970, 1117
BstYI	RGATCY	3 cut(s)	875, 970, 1117
BstZ17I	GTATAC	1 cut(s)	326
BtsCI	GGATG	5 cut(s)	64, 670, 862, 1002, 1171
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	5 cut(s)	39, 780, 1029, 1065, 1090
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	498
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	467, 644
CviAII	CATG	6 cut(s)	365, 427, 546, 695, 978, 1176
CviJI	RGCY	7 cut(s)	109, 147, 238, 278, 552, 593, 764
CviKI_1	RGCY	7 cut(s)	109, 147, 238, 278, 552, 593, 764
CviQI	GTAC	2 cut(s)	467, 644
DdeI	CTNAG	8 cut(s)	148, 295, 339, 411, 570, 596, 624, 1050
DpnI	GATC	5 cut(s)	877, 942, 972, 1119, 1153
DpnII	GATC	5 cut(s)	875, 940, 970, 1117, 1151
Eam1104I	CTCTTC	2 cut(s)	294, 532
EarI	CTCTTC	2 cut(s)	294, 532
Eco57I	CTGAAG	1 cut(s)	668
EcoRI	GAATTC	2 cut(s)	91, 168
FaeI	CATG	6 cut(s)	368, 430, 549, 698, 981, 1179
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	6 cut(s)	364, 426, 545, 694, 977, 1175
FbaI	TGATCA	1 cut(s)	940
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	138, 225, 420, 553, 786
FokI	GGATG	5 cut(s)	71, 677, 869, 1009, 1158
Fsp4HI	GCNGC	5 cut(s)	138, 225, 420, 553, 786
FspBI	CTAG	3 cut(s)	423, 1068, 1131
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	5 cut(s)	138, 225, 420, 553, 786
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	6 cut(s)	368, 430, 549, 698, 981, 1179
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	4 cut(s)	484, 566, 754, 866
HphI	GGTGA	3 cut(s)	383, 532, 1091
Hpy166II	GTNNAC	3 cut(s)	326, 523, 1158
Hpy188I	TCNGA	1 cut(s)	676
Hpy188III	TCNNGA	3 cut(s)	384, 436, 488
Hpy8I	GTNNAC	3 cut(s)	326, 523, 1158
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	5 cut(s)	339, 511, 823, 832, 1132
HpyCH4III	ACNGT	5 cut(s)	34, 466, 1024, 1060, 1085
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	8 cut(s)	148, 295, 339, 411, 570, 596, 624, 1050
Hsp92II	CATG	6 cut(s)	368, 430, 549, 698, 981, 1179
HspAI	GCGC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	5 cut(s)	875, 940, 970, 1117, 1151
LmnI	GCTCC	2 cut(s)	345, 698
LpnPI	CCDG	4 cut(s)	150, 354, 575, 864
Lsp1109I	GCAGC	4 cut(s)	149, 211, 539, 772
LweI	GCATC	2 cut(s)	655, 1180
MaeI	CTAG	3 cut(s)	423, 1068, 1131
MaeIII	GTNAC	6 cut(s)	63, 82, 290, 619, 881, 1079
MalI	GATC	5 cut(s)	877, 942, 972, 1119, 1153
MboI	GATC	5 cut(s)	875, 940, 970, 1117, 1151
MboII	GAAGA	6 cut(s)	50, 115, 168, 311, 324, 519
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	3 cut(s)	875, 970, 1117
MhlI	GDGCHC	4 cut(s)	197, 350, 688, 782
MluCI	AATT	9 cut(s)	41, 91, 168, 245, 269, 479, 678, 729, 846
MlyI	GAGTC	2 cut(s)	493, 875
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	9 cut(s)	228, 336, 484, 606, 853, 984, 1098, 1189, 1194
MroXI	GAANNNNTTC	2 cut(s)	42, 249
MseI	TTAA	3 cut(s)	78, 845, 1164
MslI	CAYNNNNRTG	2 cut(s)	369, 1166
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	3 cut(s)	140, 431, 1048
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	5 cut(s)	875, 940, 970, 1117, 1151
NheI	GCTAGC	1 cut(s)	422
NlaIII	CATG	6 cut(s)	368, 430, 549, 698, 981, 1179
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	3 cut(s)	82, 290, 1079
NspI	RCATGY	1 cut(s)	549
NspV	TTCGAA	1 cut(s)	757
PaqCI	CACCTGC	1 cut(s)	359
PciI	ACATGT	1 cut(s)	545
PctI	GAATGC	3 cut(s)	140, 431, 1048
PdmI	GAANNNNTTC	2 cut(s)	42, 249
PfeI	GAWTC	2 cut(s)	566, 754
PkrI	GCNGC	5 cut(s)	139, 226, 421, 554, 787
Ple19I	CGATCG	1 cut(s)	1154
PleI	GAGTC	2 cut(s)	492, 874
PpsI	GAGTC	2 cut(s)	492, 874
PscI	ACATGT	1 cut(s)	545
PshBI	ATTAAT	1 cut(s)	1164
PsiI	TTATAA	2 cut(s)	71, 396
PspN4I	GGNNCC	1 cut(s)	972
PsuI	RGATCY	3 cut(s)	875, 970, 1117
PvuI	CGATCG	1 cut(s)	1154
RsaI	GTAC	2 cut(s)	468, 645
RsaNI	GTAC	2 cut(s)	467, 644
RseI	CAYNNNNRTG	2 cut(s)	369, 1166
SaqAI	TTAA	3 cut(s)	78, 845, 1164
SatI	GCNGC	5 cut(s)	138, 225, 420, 553, 786
Sau3AI	GATC	5 cut(s)	875, 940, 970, 1117, 1151
SchI	GAGTC	2 cut(s)	493, 875
SduI	GDGCHC	4 cut(s)	197, 350, 688, 782
SfaNI	GCATC	2 cut(s)	655, 1180
SfuI	TTCGAA	1 cut(s)	757
SmiMI	CAYNNNNRTG	2 cut(s)	369, 1166
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	9 cut(s)	41, 91, 168, 245, 269, 479, 678, 729, 846
SsiI	CCGC	2 cut(s)	420, 635
SspI	AATATT	1 cut(s)	966
SspMI	CTAG	3 cut(s)	423, 1068, 1131
TaaI	ACNGT	5 cut(s)	34, 466, 1024, 1060, 1085
TaqI	TCGA	4 cut(s)	383, 742, 757, 1150
TasI	AATT	9 cut(s)	41, 91, 168, 245, 269, 479, 678, 729, 846
TatI	WGTACW	2 cut(s)	466, 643
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	566, 754
Tru1I	TTAA	3 cut(s)	78, 845, 1164
Tru9I	TTAA	3 cut(s)	78, 845, 1164
TscAI	CASTG	5 cut(s)	39, 787, 1029, 1065, 1090
TseFI	GTSAC	3 cut(s)	82, 290, 1079
TseI	GCWGC	4 cut(s)	137, 224, 552, 785
Tsp45I	GTSAC	3 cut(s)	82, 290, 1079
TspDTI	ATGAA	4 cut(s)	474, 851, 948, 1020
TspRI	CASTG	5 cut(s)	39, 787, 1029, 1065, 1090
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	4 cut(s)	41, 91, 168, 245
XceI	RCATGY	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	325
XmnI	GAANNNNTTC	2 cut(s)	42, 249
XspI	CTAG	3 cut(s)	423, 1068, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.