FvH4_4g10602

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004523
Physical Location & Seq
Forward (+)
14337645 .. 14339273
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10602.t1

Sequence Viewer

Length: 948 bp
ATGCTAATTCATTCACTAACATGCCTACATACAGTGATTGACTTAGAAGATGATGAAGAGTATTGCATGACAACTGATTTGGGAAAAGATCCAATTATTGTGAATCGTCAAGCTAGTAACAATGACAACCTGTTGGGAGTAATTGTCAATAGTGAGAAGGAAGCATACAACCTCTACAATGACTATGGTGCTAGAACTGGGTTCAGTGTTCGGATAGAGAAGAGGAGGAAAATCAACAATATCGTTGCAGAGAAGTTTGACTTTACAGAGAAAGAGAAGACATGGCTCAAGACACTTTATGATCTTCGTGAAAAATGGTGTGCACTATTCAGCAAAGATACATTCTCTGCCGGTATATTATCTACTCAAAGAAGTGAGAGCACAAACAATGTATTCACCCTCATGTCTACTAAAACATTGAGTCTTACTGAATTTGTGGATCATTATGATAAACAGGCAGAAAAGATGCGCTCAAGTGAATTGGAAGAGACTTTTCGATGCAATAACGGGATACCTTCTAGAGCTGCAAAAAGTAGTGGAATTAAGAAGCAAGCTGGTATGGTCTACACCCGAAAGATTTATAATTTATTTGAGTTCGAGTTTATTGCTAGCTTGGCAGTGAAGATGGAGGAAGCTAGAAGTGATGGAACACTACAGAAATTTGAACTTAATGAAGAGGGTCATAAAAGAGTGTACACTGTCGAGTTCAATTCTTCAAATAAGTCTATTTCTTGTAGTTGTCAGATGTATGAATCTATGGGTTGGTTGTGCCGTCATGCTTTGAGGGTGTCAAATGTAAAAAATATTACTCAAATTCCAGCAGAGTATATACTAAAGAGGTGGACAAAAGATGCAAAGAAAGGAGTAAAGGAAGATAGTGCATCATTACAGGTCAAGCAGAAATCAACGGTGACATTGCGTAGGAATACTTTGATGCGAAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

316

Amino Acids

36.3

Weight (kDa)

8.89

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 239 - 266 4.8e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccI GTMKAC 2 cut(s) 407, 564
AclWI GGATC 2 cut(s) 83, 447
AcsI RAATTY 3 cut(s) 431, 659, 813
AfaI GTAC 1 cut(s) 695
AgsI TTSAA 3 cut(s) 665, 709, 717
AluBI AGCT 5 cut(s) 113, 524, 554, 612, 635
AluI AGCT 5 cut(s) 113, 524, 554, 612, 635
Alw21I GWGCWC 2 cut(s) 325, 383
Alw26I GTCTC 1 cut(s) 482
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 2 cut(s) 83, 447
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 3 cut(s) 431, 659, 813
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspLEI GCGC 1 cut(s) 471
AsuHPI GGTGA 2 cut(s) 388, 922
AsuNHI GCTAGC 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 325, 383
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 619, 638
BceAI ACGGC 1 cut(s) 756
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 5 cut(s) 114, 192, 519, 609, 636
BfmI CTRYAG 1 cut(s) 653
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 5 cut(s) 456, 488, 841, 890, 924
BmtI GCTAGC 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 284
BpuEI CTTGAG 2 cut(s) 272, 457
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 914
BseMI GCAATG 1 cut(s) 914
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 1 cut(s) 511
BsiHKAI GWGCWC 2 cut(s) 325, 383
BsiSI CCGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 325, 383
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 3 cut(s) 88, 301, 439
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 2 cut(s) 83, 447
BsrDI GCAATG 1 cut(s) 914
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 3 cut(s) 88, 301, 439
Bst4CI ACNGT 3 cut(s) 34, 700, 910
Bst6I CTCTTC 4 cut(s) 51, 215, 480, 669
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 552, 610
BstDEI CTNAG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 3 cut(s) 91, 304, 442
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 88, 301, 439
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 653
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuI GTATCC 1 cut(s) 504
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 4 cut(s) 39, 211, 624, 696
Cac8I GCNNGC 2 cut(s) 552, 610
CfoI GCGC 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 350
Csp6I GTAC 1 cut(s) 694
CviAII CATG 5 cut(s) 21, 67, 282, 403, 776
CviJI RGCY 7 cut(s) 113, 286, 524, 554, 612, 635, 944
CviKI_1 RGCY 7 cut(s) 113, 286, 524, 554, 612, 635, 944
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 1 cut(s) 43
DpnI GATC 3 cut(s) 90, 303, 441
DpnII GATC 3 cut(s) 88, 301, 439
Eam1104I CTCTTC 4 cut(s) 51, 215, 480, 669
EarI CTCTTC 4 cut(s) 51, 215, 480, 669
FaeI CATG 5 cut(s) 24, 70, 285, 406, 779
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 5 cut(s) 20, 66, 281, 402, 775
FblI GTMKAC 2 cut(s) 407, 564
Fnu4HI GCNGC 1 cut(s) 525
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 5 cut(s) 114, 192, 519, 609, 636
GlaI GCGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 525
HapII CCGG 1 cut(s) 351
HhaI GCGC 1 cut(s) 471
Hin1II CATG 5 cut(s) 24, 70, 285, 406, 779
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 3 cut(s) 103, 421, 752
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 388, 922
Hpy166II GTNNAC 6 cut(s) 323, 408, 565, 694, 696, 843
Hpy188I TCNGA 2 cut(s) 213, 744
Hpy188III TCNNGA 3 cut(s) 289, 308, 519
Hpy8I GTNNAC 6 cut(s) 323, 408, 565, 694, 696, 843
HpyAV CCTTC 2 cut(s) 151, 525
HpyCH4III ACNGT 3 cut(s) 34, 700, 910
HpyCH4V TGCA 7 cut(s) 66, 248, 323, 501, 527, 854, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 1 cut(s) 43
Hsp92II CATG 5 cut(s) 24, 70, 285, 406, 779
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 88, 301, 439
LpnPI CCDG 7 cut(s) 143, 183, 364, 440, 540, 831, 875
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 5 cut(s) 456, 488, 841, 890, 924
MaeI CTAG 5 cut(s) 114, 192, 519, 609, 636
MaeIII GTNAC 2 cut(s) 116, 910
MalI GATC 3 cut(s) 90, 303, 441
MboI GATC 3 cut(s) 88, 301, 439
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 325, 383
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 8 cut(s) 182, 216, 219, 410, 622, 670, 777, 831
MseI TTAA 2 cut(s) 543, 669
MslI CAYNNNNRTG 2 cut(s) 19, 401
MspI CCGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 614
NdeII GATC 3 cut(s) 88, 301, 439
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 5 cut(s) 24, 70, 285, 406, 779
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 1 cut(s) 24
PfeI GAWTC 2 cut(s) 103, 752
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 582
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
RseI CAYNNNNRTG 2 cut(s) 19, 401
SaqAI TTAA 2 cut(s) 543, 669
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 3 cut(s) 88, 301, 439
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 2 cut(s) 325, 383
SfaNI GCATC 5 cut(s) 456, 488, 841, 890, 924
SfcI CTRYAG 1 cut(s) 653
SmiMI CAYNNNNRTG 2 cut(s) 19, 401
SmlI CTYRAG 2 cut(s) 287, 472
SmoI CTYRAG 2 cut(s) 287, 472
SspI AATATT 1 cut(s) 805
SspMI CTAG 5 cut(s) 114, 192, 519, 609, 636
TaaI ACNGT 3 cut(s) 34, 700, 910
TaqI TCGA 3 cut(s) 496, 597, 702
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 2 cut(s) 103, 752
Tru1I TTAA 2 cut(s) 543, 669
Tru9I TTAA 2 cut(s) 543, 669
TscAI CASTG 4 cut(s) 39, 211, 624, 703
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 3 cut(s) 69, 687, 765
TspRI CASTG 4 cut(s) 39, 211, 624, 703
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 3 cut(s) 431, 659, 813
XbaI TCTAGA 1 cut(s) 518
XceI RCATGY 1 cut(s) 24
XmiI GTMKAC 2 cut(s) 407, 564
XspI CTAG 5 cut(s) 114, 192, 519, 609, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.