Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

10260871 .. 10263496

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16341.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGACGATGTGAATACAAATAGGGCTGTGAAGCCAGCAGAATCAGAACATGCAGAGCGACTGGAGCCGCAAATTGAAGGAGCGGAAGCGGAGAAGATGAGGCTGATATTAGGGGTATTGAATGTGAGGAATGTTACTAAGATACCACCGCAATATGTACTGAAGCGTTGGAAAAAGGATGCAAAATCAGAAATTGGGGCACAAGAGCATGAAGCATTATTACAACAAAAGGACAAACCATCAATTGCATTGCGTCGAAATAATATGATTCGAAAAGTTTATGACATATTGAGCACTGCTGCATTGACAGAGAAAGGTTGTAAAATCGCAATGGAAAAGTTGAAGGAGATGAAGGAGTTAATTGAAAAGGATGAGGCAGAGTCAAATGGATCTGGTAACAAAGAAAACAATGAGGCTTTGAATGATGATAGTATTAGTGATGATAATGAAAGTGATCATCAAGTTGATAATACACCAATATTGGATCCTCCATGTGCAAAGACAAAAGGGATGAGTAATGAAAGATGGAAATCAACAGTGGAGAAGCGAAACAAGAATGCTTCTAAGAATACAGTGTCATCTAGTAAAAAAAGTGACAGTGAGAAGCAACAAAAGGGGAGGTCATCAAAAGATCCATTCTCATCTAGTAAGAAGGTTTTGAACACATATTCCAGATATCATGCACAATATAATTCTTCAAACCCATATCCTATACCGATGAGTACTCAGTTTCATCCAACTATGAACTTGTCGGCAATCAATACTCCAGTATGTTTGCCTCCATCTAATCAGGTAATGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

268

Amino Acids

30.07

Weight (kDa)

8.9

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	4 cut(s)	68, 83, 89, 149
AclWI	GGATC	4 cut(s)	397, 479, 492, 626
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	159, 724
AgsI	TTSAA	7 cut(s)	77, 121, 343, 365, 421, 661, 699
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
Alw21I	GWGCWC	1 cut(s)	296
AlwI	GGATC	4 cut(s)	397, 479, 492, 626
ApeKI	GCWGC	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	484
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	247, 519, 790
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	2 cut(s)	582, 645
BisI	GCNGC	2 cut(s)	68, 300
BlsI	GCNGC	2 cut(s)	69, 301
BmcAI	AGTACT	1 cut(s)	724
BmiI	GGNNCC	2 cut(s)	66, 486
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	83, 750
Bpu14I	TTCGAA	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	66, 767
Bse3DI	GCAATG	2 cut(s)	248, 336
Bse8I	GATNNNNATC	1 cut(s)	529
BseGI	GGATG	4 cut(s)	184, 376, 516, 733
BseJI	GATNNNNATC	1 cut(s)	529
BseMI	GCAATG	2 cut(s)	248, 336
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	2 cut(s)	66, 767
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	202, 296
Bsp143I	GATC	4 cut(s)	389, 454, 484, 631
BspACI	CCGC	4 cut(s)	68, 83, 89, 149
BspCNI	CTCAG	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	66, 486
BspPI	GGATC	4 cut(s)	397, 479, 492, 626
BspT104I	TTCGAA	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	248, 336
BsrI	ACTGG	2 cut(s)	66, 767
BssMI	GATC	4 cut(s)	389, 454, 484, 631
Bst4CI	ACNGT	3 cut(s)	538, 574, 599
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	138, 564, 726
BstF5I	GGATG	4 cut(s)	184, 376, 516, 733
BstKTI	GATC	4 cut(s)	392, 457, 487, 634
BstMBI	GATC	4 cut(s)	389, 454, 484, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	3 cut(s)	389, 484, 631
BstYI	RGATCY	3 cut(s)	389, 484, 631
BtsCI	GGATG	4 cut(s)	184, 376, 516, 733
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	4 cut(s)	294, 543, 579, 604
Cac8I	GCNNGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	158, 723
CviAII	CATG	4 cut(s)	50, 209, 492, 680
CviJI	RGCY	5 cut(s)	26, 34, 67, 103, 416
CviKI_1	RGCY	5 cut(s)	26, 34, 67, 103, 416
CviQI	GTAC	2 cut(s)	158, 723
DdeI	CTNAG	3 cut(s)	138, 564, 726
DpnI	GATC	4 cut(s)	391, 456, 486, 633
DpnII	GATC	4 cut(s)	389, 454, 484, 631
Eco32I	GATATC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	677
FaeI	CATG	4 cut(s)	53, 212, 495, 683
FatI	CATG	4 cut(s)	49, 208, 491, 679
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	68, 300
FokI	GGATG	4 cut(s)	191, 383, 523, 720
Fsp4HI	GCNGC	2 cut(s)	68, 300
FspBI	CTAG	2 cut(s)	582, 645
GluI	GCNGC	2 cut(s)	68, 300
GsuI	CTGGAG	2 cut(s)	83, 750
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	53, 212, 495, 683
HinfI	GANTC	3 cut(s)	41, 268, 380
Hpy188I	TCNGA	2 cut(s)	46, 190
Hpy188III	TCNNGA	1 cut(s)	672
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	4 cut(s)	71, 337, 346, 646
HpyCH4III	ACNGT	3 cut(s)	538, 574, 599
HpyCH4V	TGCA	6 cut(s)	53, 182, 248, 302, 497, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	3 cut(s)	138, 564, 726
Hsp92II	CATG	4 cut(s)	53, 212, 495, 683
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	389, 454, 484, 631
LmnI	GCTCC	2 cut(s)	64, 80
LpnPI	CCDG	6 cut(s)	47, 48, 378, 685, 776, 780
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	582, 645
MaeIII	GTNAC	3 cut(s)	133, 395, 593
MalI	GATC	4 cut(s)	391, 456, 486, 633
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	4 cut(s)	389, 454, 484, 631
MboII	GAAGA	2 cut(s)	106, 687
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	3 cut(s)	389, 484, 631
MhlI	GDGCHC	2 cut(s)	202, 296
MluCI	AATT	5 cut(s)	72, 192, 243, 360, 691
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	2 cut(s)	149, 761
MnlI	CCTC	8 cut(s)	93, 120, 367, 406, 498, 612, 789, 792
MseI	TTAA	1 cut(s)	359
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	4 cut(s)	389, 454, 484, 631
NlaIII	CATG	4 cut(s)	53, 212, 495, 683
NlaIV	GGNNCC	2 cut(s)	66, 486
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	271
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	41, 268
PkrI	GCNGC	2 cut(s)	69, 301
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	66, 486
PsuI	RGATCY	3 cut(s)	389, 484, 631
RsaI	GTAC	2 cut(s)	159, 724
RsaNI	GTAC	2 cut(s)	158, 723
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	68, 300
Sau3AI	GATC	4 cut(s)	389, 454, 484, 631
ScaI	AGTACT	1 cut(s)	724
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	202, 296
SetI	ASST	5 cut(s)	319, 623, 657, 795, 803
SfaNI	GCATC	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	271
Sse9I	AATT	5 cut(s)	72, 192, 243, 360, 691
SsiI	CCGC	4 cut(s)	68, 83, 89, 149
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	2 cut(s)	582, 645
TaaI	ACNGT	3 cut(s)	538, 574, 599
TaqI	TCGA	2 cut(s)	256, 271
TasI	AATT	5 cut(s)	72, 192, 243, 360, 691
TatI	WGTACW	2 cut(s)	157, 722
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	41, 268
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	4 cut(s)	301, 543, 579, 604
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	6 cut(s)	225, 365, 462, 534, 722, 758
TspRI	CASTG	4 cut(s)	301, 543, 579, 604
XceI	RCATGY	1 cut(s)	53
XspI	CTAG	2 cut(s)	582, 645
ZrmI	AGTACT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.