Rw2G015080

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004523
Physical Location & Seq
Forward (+)
17397204 .. 17399006
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015080.1

Sequence Viewer

Length: 1803 bp
ATGCCTACAGTAATTGACATAGAAGACGATGGAGAACATAGCATGGGAACTGCTTTGGGAAAAGATTCAATGTTTGTGAATCGTCAAGTTAGTAAAGATGATGATTTGTATGGAGTGATTGTGAATAGTGAGGAAGAAGCATTTAACCTCTATTGTGAGTATGGTGCTAGAATGGGGTTTAGTGTTCGGATAATGCAGAGGAGGAAAACCAACAATATTGTGAAGCAAGTTAATTATTGTTGTTCAAAAGAAGGTTTTAAACTAGATAGTGATCCTTCGGAAGTGAAAAAGGCAGATAGGCTGGACACTAGAACTGGTTGCACAGCAAAAATTCGATTTGGATTGCAAGATAACAATTTATGGAAAGTGACTCTCTTTGTCCCTGAACACAACCATAAGCTTGCAGAGCCAGAAGAAAGACAATTTTTGCGCTCCAATCGAAAAGTTTCAAATGCTCATCAGGGGGTGATTAAATCAATGAAAACCGCAGGTATGAGTACCATAAATACATATTCATATTTAGCAGAAGAAGTTGGGGGATCTCAAAATGTTGGATTTACAAAGACTGACTGCTACAATTTTGTAAGCAGAGAGAGAATGATTATGCTTGAAGCAGGGGATGCTCAAAGCTTGATCAATTTATTCAAGAAAAAGCAAATTGAAGATCCTATGTTTTTCTACACCATGCAAGTGGATCAAGAAAATCGAATGACAAACTTTTTCTGGAGAGATGGAAAGTCGAAAACTGACTTTGAATGCTTTGGGGACGTTATAGTATTTGATACTACTTACCGGACCAATAAATATAGCATGATTTGTGCTCCTTTCGTTGGGGTTAACCACCATTGGAAAAATGTATTGTTTGGTTGTGCATTTTTGCTAGATGAGACCACTGCTTCATTTATTTGGTTATTTGAGACATTCTTAGAAGCGATGGAAGGTAAAAAACCGAAGACTATTTTTACTGATCGATGTCAGGCAATGGCAAATGCTATTGAGAAGGTTTTTCCTGAGACACGCCATCGGTTATGTTTGTGGCACATATCAAAGAATGCGGTACAAAACTTGAATTGGCTTTATAGAAATCCTGATTTCAATGAGCTTTTCAAGAAGTTTCTTTTTGGACGTGTGACAGAAGATGAATTTGAGTCTACTTGGAATGAAATAATAGAGAAGTTTGATCTTGTAGGGAACACATGGCTCAAGACACTTTATGACCTTCGTGAAAAATGGTGTGCATTATTTAGTAAGGATACATTCTCTGCAGGAATATTATCTACACAAAGAAGTGAGAGCACAAACAATGTGTTTACCCTCATGTCTACTAAAACACTGAGTCTTACTGAATTTGTGCATCATTATGATAAACAGGCAGAACAAATGCGTTCAAGTGAATTGGAAGAGACTTTTCGGTGCAATAACGGGATACCTACTAGGGCTGCAAGAAGTAGTGGAATTAAGAAGCAAGCTGGTATGATCTACACCCGAAAAATTTATAATTTATTTGAGTTTGAGTTTGTCGCTAGCTTGGCAGTGAAGATGGAGGAAGTTGGAAGTGATGGAACATTGCAGACATTTGAACTTAATGAGGAGGGTCATAAAAGAGTGTACATTGTTCGATTCAATTCTTCAAATCTGACCATCTCTTGTAGTTGTCAGATGTATGAATCTATGGGCTGGTTATGCCGTCATGCTTTGAGGGTGTTAAATGTGAAAAATATTACTCAAATACCAACACAGTATATACTAAAGAGATGGACAAAAGATGCAAAGAAAGGAGTAGAGGCAAGAAATCAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

600

Amino Acids

69.61

Weight (kDa)

7.82

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 50 - 135 1.3e-21 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 225 - 340 1.2e-10 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 257 - 351 7.6e-33 MULE transposase domain
SWIM PF04434 544 - 573 6.8e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1497
Acc36I ACCTGC 1 cut(s) 479
AccI GTMKAC 2 cut(s) 1151, 1322
AciI CCGC 2 cut(s) 486, 1055
AclWI GGATC 4 cut(s) 266, 547, 659, 702
AcsI RAATTY 4 cut(s) 330, 1142, 1346, 1491
AfaI GTAC 3 cut(s) 499, 1059, 1610
AfiI CCNNNNNNNGG 1 cut(s) 830
AflIII ACRYGT 1 cut(s) 1126
AjiI CACGTC 1 cut(s) 1127
AluBI AGCT 5 cut(s) 400, 630, 1102, 1469, 1527
AluI AGCT 5 cut(s) 400, 630, 1102, 1469, 1527
Alw21I GWGCWC 2 cut(s) 823, 1298
Alw26I GTCTC 4 cut(s) 881, 911, 1007, 1397
AlwI GGATC 4 cut(s) 266, 547, 659, 702
ApeKI GCWGC 1 cut(s) 1439
ApoI RAATTY 4 cut(s) 330, 1142, 1346, 1491
Asp700I GAANNNNTTC 2 cut(s) 64, 445
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 478
AsuNHI GCTAGC 1 cut(s) 1523
AvaII GGWCC 1 cut(s) 795
BbsI GAAGAC 2 cut(s) 30, 959
Bbv12I GWGCWC 2 cut(s) 823, 1298
BbvI GCAGC 1 cut(s) 1426
BccI CCATC 8 cut(s) 23, 725, 928, 1029, 1534, 1553, 1649, 1749
BceAI ACGGC 1 cut(s) 1671
BciVI GTATCC 2 cut(s) 1246, 1419
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 4 cut(s) 881, 911, 1007, 1397
BfaI CTAG 6 cut(s) 168, 263, 309, 881, 1434, 1524
BfmI CTRYAG 2 cut(s) 6, 1263
BfuAI ACCTGC 1 cut(s) 479
BfuI GTATCC 2 cut(s) 1246, 1419
BisI GCNGC 1 cut(s) 1440
BlsI GCNGC 1 cut(s) 1441
Bme18I GGWCC 1 cut(s) 795
BmgBI CACGTC 1 cut(s) 1127
BmgT120I GGNCC 1 cut(s) 795
BmsI GCATC 3 cut(s) 610, 1363, 1756
BmtI GCTAGC 1 cut(s) 1527
BpiI GAAGAC 2 cut(s) 30, 959
BpmI CTGGAG 1 cut(s) 745
BpuEI CTTGAG 1 cut(s) 1187
Bsa29I ATCGAT 1 cut(s) 970
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 881
BsaWI WCCGGW 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 2 cut(s) 987, 1565
Bse8I GATNNNNATC 1 cut(s) 270
BseCI ATCGAT 1 cut(s) 970
BseGI GGATG 1 cut(s) 625
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 830
BseMI GCAATG 2 cut(s) 987, 1565
BseMII CTCAG 2 cut(s) 1002, 1325
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 2 cut(s) 214, 1604
BseXI GCAGC 1 cut(s) 1426
BshVI ATCGAT 1 cut(s) 970
BsiHKAI GWGCWC 2 cut(s) 823, 1298
BsiSI CCGG 1 cut(s) 793
BslFI GGGAC 2 cut(s) 365, 779
BslI CCNNNNNNNGG 1 cut(s) 830
BsmAI GTCTC 4 cut(s) 881, 911, 1007, 1397
BsmFI GGGAC 2 cut(s) 365, 779
BsmI GAATGC 2 cut(s) 761, 1057
Bso31I GGTCTC 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 823, 1298
Bsp1407I TGTACA 1 cut(s) 1608
Bsp143I GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
BspACI CCGC 2 cut(s) 486, 1055
BspCNI CTCAG 2 cut(s) 1003, 1326
BspDI ATCGAT 1 cut(s) 970
BspMAI CTGCAG 1 cut(s) 1267
BspMI ACCTGC 1 cut(s) 479
BspOI GCTAGC 1 cut(s) 1527
BspPI GGATC 4 cut(s) 266, 547, 659, 702
BspTNI GGTCTC 1 cut(s) 881
BsrDI GCAATG 2 cut(s) 987, 1565
BsrGI TGTACA 1 cut(s) 1608
BsrI ACTGG 1 cut(s) 319
BssMI GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
Bst4CI ACNGT 3 cut(s) 10, 1740, 1800
Bst6I CTCTTC 1 cut(s) 1395
BstAPI GCANNNNNTGC 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 1608
BstC8I GCNNGC 3 cut(s) 402, 1467, 1525
BstDEI CTNAG 3 cut(s) 925, 1011, 1334
BstF5I GGATG 1 cut(s) 625
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 8 cut(s) 274, 542, 636, 667, 697, 970, 1183, 1479
BstMAI GTCTC 4 cut(s) 881, 911, 1007, 1397
BstMBI GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
BstMWI GCNNNNNNNGC 4 cut(s) 406, 620, 1529, 1683
BstSFI CTRYAG 2 cut(s) 6, 1263
BstV1I GCAGC 1 cut(s) 1426
BstV2I GAAGAC 2 cut(s) 30, 959
BstX2I RGATCY 2 cut(s) 539, 664
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 539, 664
Bsu15I ATCGAT 1 cut(s) 970
BsuI GTATCC 2 cut(s) 1246, 1419
BsuTUI ATCGAT 1 cut(s) 970
BtgZI GCGATG 1 cut(s) 947
BtrI CACGTC 1 cut(s) 1127
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 2 cut(s) 891, 1539
BtsIMutI CAGTG 3 cut(s) 891, 1331, 1539
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 3 cut(s) 402, 1467, 1525
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 970
Csp6I GTAC 3 cut(s) 498, 1058, 1609
CviAII CATG 6 cut(s) 43, 685, 811, 1197, 1318, 1691
CviQI GTAC 3 cut(s) 498, 1058, 1609
DdeI CTNAG 3 cut(s) 925, 1011, 1334
DpnI GATC 8 cut(s) 273, 541, 635, 666, 696, 969, 1182, 1478
DpnII GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 1395
EarI CTCTTC 1 cut(s) 1395
Eco31I GGTCTC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 795
FaeI CATG 6 cut(s) 46, 688, 814, 1200, 1321, 1694
FaqI GGGAC 2 cut(s) 365, 779
FatI CATG 6 cut(s) 42, 684, 810, 1196, 1317, 1690
FbaI TGATCA 1 cut(s) 633
FblI GTMKAC 2 cut(s) 1151, 1322
Fnu4HI GCNGC 1 cut(s) 1440
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 1 cut(s) 1440
FspBI CTAG 6 cut(s) 168, 263, 309, 881, 1434, 1524
GlaI GCGC 1 cut(s) 431
GluI GCNGC 1 cut(s) 1440
GsuI CTGGAG 1 cut(s) 745
HapII CCGG 1 cut(s) 793
HhaI GCGC 1 cut(s) 432
Hin1II CATG 6 cut(s) 46, 688, 814, 1200, 1321, 1694
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 398, 628
HinfI GANTC 7 cut(s) 65, 79, 370, 1148, 1336, 1620, 1667
HpaI GTTAAC 1 cut(s) 838
HpaII CCGG 1 cut(s) 793
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 5 cut(s) 838, 1152, 1311, 1323, 1609
Hpy188I TCNGA 4 cut(s) 189, 280, 1638, 1659
Hpy188III TCNNGA 8 cut(s) 646, 698, 724, 1010, 1088, 1108, 1204, 1223
Hpy8I GTNNAC 5 cut(s) 838, 1152, 1311, 1323, 1609
HpyAV CCTTC 5 cut(s) 245, 285, 932, 994, 1229
HpyCH4III ACNGT 3 cut(s) 10, 1740, 1800
HpyCH4IV ACGT 2 cut(s) 768, 1126
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 620, 1529, 1683
HpyF3I CTNAG 3 cut(s) 925, 1011, 1334
HpySE526I ACGT 2 cut(s) 768, 1126
Hsp92II CATG 6 cut(s) 46, 688, 814, 1200, 1321, 1694
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 633
KspAI GTTAAC 1 cut(s) 838
Kzo9I GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
LmnI GCTCC 2 cut(s) 437, 826
Lsp1109I GCAGC 1 cut(s) 1426
LweI GCATC 3 cut(s) 610, 1363, 1756
MaeI CTAG 6 cut(s) 168, 263, 309, 881, 1434, 1524
MaeII ACGT 2 cut(s) 768, 1126
MaeIII GTNAC 2 cut(s) 367, 1129
MalI GATC 8 cut(s) 273, 541, 635, 666, 696, 969, 1182, 1478
MboI GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
MflI RGATCY 2 cut(s) 539, 664
MhlI GDGCHC 2 cut(s) 823, 1298
MlyI GAGTC 3 cut(s) 364, 1157, 1345
MmeI TCCRAC 2 cut(s) 532, 1531
MroXI GAANNNNTTC 2 cut(s) 64, 445
MseI TTAA 8 cut(s) 144, 231, 258, 471, 837, 1458, 1584, 1706
MslI CAYNNNNRTG 2 cut(s) 689, 1359
MspI CCGG 1 cut(s) 793
Mva1269I GAATGC 2 cut(s) 761, 1057
MwoI GCNNNNNNNGC 4 cut(s) 406, 620, 1529, 1683
NdeII GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
NheI GCTAGC 1 cut(s) 1523
NlaIII CATG 6 cut(s) 46, 688, 814, 1200, 1321, 1694
NmuCI GTSAC 2 cut(s) 367, 1129
PctI GAATGC 2 cut(s) 761, 1057
PdmI GAANNNNTTC 2 cut(s) 64, 445
PfeI GAWTC 4 cut(s) 65, 79, 1620, 1667
PkrI GCNGC 1 cut(s) 1441
PleI GAGTC 3 cut(s) 364, 1156, 1344
PpsI GAGTC 3 cut(s) 364, 1156, 1344
PsiI TTATAA 1 cut(s) 1497
PspPI GGNCC 1 cut(s) 795
PstI CTGCAG 1 cut(s) 1267
PsuI RGATCY 2 cut(s) 539, 664
RsaI GTAC 3 cut(s) 499, 1059, 1610
RsaNI GTAC 3 cut(s) 498, 1058, 1609
RseI CAYNNNNRTG 2 cut(s) 689, 1359
SaqAI TTAA 8 cut(s) 144, 231, 258, 471, 837, 1458, 1584, 1706
SatI GCNGC 1 cut(s) 1440
Sau3AI GATC 8 cut(s) 271, 539, 633, 664, 694, 967, 1180, 1476
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 3 cut(s) 364, 1157, 1345
SduI GDGCHC 2 cut(s) 823, 1298
SfaNI GCATC 3 cut(s) 610, 1363, 1756
SfcI CTRYAG 2 cut(s) 6, 1263
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 2 cut(s) 689, 1359
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
SsiI CCGC 2 cut(s) 486, 1055
SspI AATATT 3 cut(s) 217, 1272, 1720
SspMI CTAG 6 cut(s) 168, 263, 309, 881, 1434, 1524
TaaI ACNGT 3 cut(s) 10, 1740, 1800
TaiI ACGT 2 cut(s) 771, 1129
TaqI TCGA 6 cut(s) 334, 439, 706, 740, 970, 1618
TatI WGTACW 1 cut(s) 1608
TfiI GAWTC 4 cut(s) 65, 79, 1620, 1667
Tru1I TTAA 8 cut(s) 144, 231, 258, 471, 837, 1458, 1584, 1706
Tru9I TTAA 8 cut(s) 144, 231, 258, 471, 837, 1458, 1584, 1706
TscAI CASTG 3 cut(s) 898, 1338, 1539
TseFI GTSAC 2 cut(s) 367, 1129
TseI GCWGC 1 cut(s) 1439
Tsp45I GTSAC 2 cut(s) 367, 1129
TspDTI ATGAA 6 cut(s) 494, 504, 888, 1155, 1176, 1680
TspRI CASTG 3 cut(s) 898, 1338, 1539
VpaK11BI GGWCC 1 cut(s) 795
XapI RAATTY 4 cut(s) 330, 1142, 1346, 1491
XmiI GTMKAC 2 cut(s) 1151, 1322
XmnI GAANNNNTTC 2 cut(s) 64, 445
XspI CTAG 6 cut(s) 168, 263, 309, 881, 1434, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.