Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

35049223 .. 35051939

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTACTAAAACACTGAGTCTTACTGAATTTGTGCATCATTATGATAAACAAGCAGAACAAATGCGTTCAAGTGAATTGGAAGAGACTTTTCGGTGCAACAACGGAATACCTACTAGGGCTGCAAGAAGTAGTGGAATTAAGAAGCAAGCTGGTATGGTCTGCACCCGAAAAGATTATAATTTATTTGAGTTTGAGTTTGTCGCTAGCTTGGCAGTGAAGATGGAGGAAGTTGGAAGTGATGGAACACTACAGACATTTGAACTTAATGAGGAGGGTCATAAAAGAGTGTACATTGTTCGATTTAATTCTTCAAATCTGACCATCTCTTGTAGTTATCAGATGTATGAATCTATGGGCTGGTTATGCTGTCATGCTTTGAGGGTGCTAAATGTGAAAAATATCACTCAAATACCAACACAGTATATACTAAAGAGATGGACAAAAGATGCAAAGAAAAGAGTAGAGACAAATAGTGTACCACTACAGGTCAAGGAGAAATCAATGGTGACATTGCGTAGAAATACTTTAATGCGAAAAGCTTATGGTATAATTAGTAAGGGAGCAGAAACAACTAGTGGTAGTGATATCGCGATGCAGAAATTGATAGAAGCAGAAGAGCTAATTGAGAGGAATATGAAGAAGTTATCTATTATGGGAGATGTCAATGAAAAAATCAATGAGGTTCCTAGTGTTAATACTTCTGGTGGCAGTGCTAACAAAAATGAAACCTTATTTGACGAAACACCAGTACTCAATCCAGCAGGTGTGTGGCCAAAAGGCATGAGTAATAAAAGAAGGAAAGACAAAATGGAGAAGAAACAAAATAAAAAGGCACCAAAAGGCCAAGGTTCCAGGAAAATCAAGCCACCAATTAGTGGAGGGCCTTCAGATACTTCACTTCATGTAGTCCATAATTCAAGCTTGCTTCACCCATTTGTTGCATCGAGTGGTACAAATTTCATTAACCAGCAATTTCCAACTATGAGCTTGCCAACAACGAATGTTTATGCTCCGTACGCTCTATATAATCAGGCCACACCTCTTCTTTTTGTCCAAACAGATCAGCTGCCTCTAGAGATCTCATTGTGCCCATGTCAAGTCTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

370

Amino Acids

41.54

Weight (kDa)

9.32

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AarI	CACCTGC	1 cut(s)	755
Acc36I	ACCTGC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	835
AccB7I	CCANNNNNTGG	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	2 cut(s)	29, 958
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	5 cut(s)	293, 480, 753, 955, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	4 cut(s)	72, 263, 315, 921
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	7 cut(s)	152, 210, 542, 622, 924, 990, 1069
AluI	AGCT	7 cut(s)	152, 210, 542, 622, 924, 990, 1069
Alw26I	GTCTC	3 cut(s)	80, 461, 1108
AoxI	GGCC	4 cut(s)	773, 844, 884, 1035
ApeKI	GCWGC	2 cut(s)	122, 1069
ApoI	RAATTY	2 cut(s)	29, 958
AspS9I	GGNCC	1 cut(s)	884
AsuHPI	GGTGA	2 cut(s)	520, 923
AsuNHI	GCTAGC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	1094
BalI	TGGCCA	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	835
BbvI	GCAGC	2 cut(s)	109, 1056
BccI	CCATC	4 cut(s)	217, 236, 332, 432
BciT130I	CCWGG	1 cut(s)	856
BcoDI	GTCTC	3 cut(s)	80, 461, 1108
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	5 cut(s)	117, 207, 576, 690, 1076
BfmI	CTRYAG	2 cut(s)	251, 485
BfuAI	ACCTGC	1 cut(s)	755
BglII	AGATCT	1 cut(s)	1080
BisI	GCNGC	2 cut(s)	123, 1070
BlsI	GCNGC	2 cut(s)	124, 1071
BmcAI	AGTACT	1 cut(s)	753
Bme1390I	CCNGG	1 cut(s)	856
BmgT120I	GGNCC	1 cut(s)	884
BmiI	GGNNCC	3 cut(s)	687, 837, 853
BmrFI	CCNGG	1 cut(s)	856
BmsI	GCATC	4 cut(s)	46, 439, 585, 953
BmtI	GCTAGC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	847
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	856
BseDI	CCNNGG	1 cut(s)	847
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	1094
BseXI	GCAGC	2 cut(s)	109, 1056
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	593
BshFI	GGCC	4 cut(s)	775, 846, 886, 1037
BshNI	GGYRCC	1 cut(s)	835
BsiWI	CGTACG	1 cut(s)	1017
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	3 cut(s)	80, 461, 1108
BsnI	GGCC	4 cut(s)	775, 846, 886, 1037
Bsp1286I	GDGCHC	1 cut(s)	1094
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	1063, 1080
Bsp68I	TCGCGA	1 cut(s)	593
BspANI	GGCC	4 cut(s)	775, 846, 886, 1037
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	593
BspLI	GGNNCC	3 cut(s)	687, 837, 853
BspMI	ACCTGC	1 cut(s)	755
BspOI	GCTAGC	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	749
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	2 cut(s)	1063, 1080
BssT1I	CCWWGG	1 cut(s)	847
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	3 cut(s)	78, 612, 1050
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	150, 208, 926, 992
BstDEI	CTNAG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	593
BstKTI	GATC	2 cut(s)	1066, 1083
BstMAI	GTCTC	3 cut(s)	80, 461, 1108
BstMBI	GATC	2 cut(s)	1063, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 366, 1019
BstNI	CCWGG	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	854
BstSFI	CTRYAG	2 cut(s)	251, 485
BstSLI	GKGCMC	1 cut(s)	1094
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	109, 1056
BstX2I	RGATCY	1 cut(s)	1080
BstYI	RGATCY	1 cut(s)	1080
BsuRI	GGCC	4 cut(s)	775, 846, 886, 1037
BtgZI	GCGATG	1 cut(s)	608
BtsI	GCAGTG	2 cut(s)	222, 718
BtsIMutI	CAGTG	3 cut(s)	14, 222, 718
BtuMI	TCGCGA	1 cut(s)	593
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	4 cut(s)	150, 208, 926, 992
Cfr13I	GGNCC	1 cut(s)	884
Csp6I	GTAC	5 cut(s)	292, 479, 752, 954, 1018
CviAII	CATG	4 cut(s)	374, 784, 905, 1095
CviQI	GTAC	5 cut(s)	292, 479, 752, 954, 1018
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	2 cut(s)	1065, 1082
DpnII	GATC	2 cut(s)	1063, 1080
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	3 cut(s)	78, 612, 1050
EarI	CTCTTC	3 cut(s)	78, 612, 1050
Eco130I	CCWWGG	1 cut(s)	847
Eco32I	GATATC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	873
EcoO109I	RGGNCCY	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	854
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	847
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	4 cut(s)	377, 787, 908, 1098
FatI	CATG	4 cut(s)	373, 783, 904, 1094
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	123, 1070
Fsp4HI	GCNGC	2 cut(s)	123, 1070
FspBI	CTAG	5 cut(s)	117, 207, 576, 690, 1076
GluI	GCNGC	2 cut(s)	123, 1070
HaeIII	GGCC	4 cut(s)	775, 846, 886, 1037
Hin1II	CATG	4 cut(s)	377, 787, 908, 1098
HindIII	AAGCTT	2 cut(s)	540, 922
HinfI	GANTC	2 cut(s)	19, 350
HphI	GGTGA	2 cut(s)	520, 923
Hpy166II	GTNNAC	3 cut(s)	6, 292, 479
Hpy188I	TCNGA	3 cut(s)	321, 342, 892
Hpy188III	TCNNGA	2 cut(s)	592, 1076
Hpy8I	GTNNAC	3 cut(s)	6, 292, 479
HpyAV	CCTTC	2 cut(s)	792, 897
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	7 cut(s)	37, 99, 125, 165, 452, 598, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 366, 1019
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	377, 787, 908, 1098
Kzo9I	GATC	2 cut(s)	1063, 1080
LguI	GCTCTTC	1 cut(s)	612
LmnI	GCTCC	2 cut(s)	563, 1018
Lsp1109I	GCAGC	2 cut(s)	109, 1056
LweI	GCATC	4 cut(s)	46, 439, 585, 953
MaeI	CTAG	5 cut(s)	117, 207, 576, 690, 1076
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	1065, 1082
MboI	GATC	2 cut(s)	1063, 1080
MboII	GAAGA	7 cut(s)	95, 232, 303, 629, 652, 829, 1037
MflI	RGATCY	1 cut(s)	1080
MhlI	GDGCHC	1 cut(s)	1094
MlsI	TGGCCA	1 cut(s)	775
MluNI	TGGCCA	1 cut(s)	775
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	214, 1004
MnlI	CCTC	9 cut(s)	220, 265, 268, 375, 624, 676, 875, 1053, 1083
Mox20I	TGGCCA	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	775
MseI	TTAA	6 cut(s)	141, 267, 306, 530, 696, 966
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	775
MspA1I	CMGCKG	1 cut(s)	1069
MspR9I	CCNGG	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	856
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	212, 366, 1019
NdeII	GATC	2 cut(s)	1063, 1080
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	377, 787, 908, 1098
NlaIV	GGNNCC	3 cut(s)	687, 837, 853
NmuCI	GTSAC	1 cut(s)	508
NruI	TCGCGA	1 cut(s)	593
PaqCI	CACCTGC	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	350
Pfl23II	CGTACG	1 cut(s)	1017
PflMI	CCANNNNNTGG	1 cut(s)	878
PfoI	TCCNGGA	1 cut(s)	854
PkrI	GCNGC	2 cut(s)	124, 1071
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	854
PspLI	CGTACG	1 cut(s)	1017
PspN4I	GGNNCC	3 cut(s)	687, 837, 853
PspPI	GGNCC	1 cut(s)	884
PsuI	RGATCY	1 cut(s)	1080
PvuII	CAGCTG	1 cut(s)	1069
RruI	TCGCGA	1 cut(s)	593
RsaI	GTAC	5 cut(s)	293, 480, 753, 955, 1019
RsaNI	GTAC	5 cut(s)	292, 479, 752, 954, 1018
RseI	CAYNNNNRTG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	612
SaqAI	TTAA	6 cut(s)	141, 267, 306, 530, 696, 966
SatI	GCNGC	2 cut(s)	123, 1070
Sau3AI	GATC	2 cut(s)	1063, 1080
Sau96I	GGNCC	1 cut(s)	884
ScaI	AGTACT	1 cut(s)	753
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	856
SduI	GDGCHC	1 cut(s)	1094
SfaNI	GCATC	4 cut(s)	46, 439, 585, 953
SfcI	CTRYAG	2 cut(s)	251, 485
SmiMI	CAYNNNNRTG	1 cut(s)	42
SpeI	ACTAGT	1 cut(s)	575
SspMI	CTAG	5 cut(s)	117, 207, 576, 690, 1076
StyD4I	CCNGG	1 cut(s)	854
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	301, 947
TatI	WGTACW	2 cut(s)	291, 751
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	6 cut(s)	141, 267, 306, 530, 696, 966
Tru9I	TTAA	6 cut(s)	141, 267, 306, 530, 696, 966
TscAI	CASTG	3 cut(s)	21, 222, 718
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	122, 1069
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	6 cut(s)	363, 653, 684, 741, 893, 952
TspGWI	ACGGA	2 cut(s)	120, 1005
TspRI	CASTG	3 cut(s)	21, 222, 718
Van91I	CCANNNNNTGG	1 cut(s)	878
XapI	RAATTY	2 cut(s)	29, 958
XbaI	TCTAGA	1 cut(s)	1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	5 cut(s)	117, 207, 576, 690, 1076
ZrmI	AGTACT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.