Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

41795649 .. 41796980

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCTACTAAAACACTGAGTCTCACTGAATTTGTGCATCATTATGATAAACAGGCAGAACAAATGCGTTCAAGTGAATTGGAAGAGACTTTTCGATGCAATAACGAAATACCTACTAGGGCTGCAAAAAGTAGTGGAATTAAGAAGCAAGCTGGTATGATCTACACTCGAAAAATTTATAATTTATTTGAGTTTGAGTTTATCGCTAGCTTGGCAGTGAAGATGGAGGAACTTAATGAGGAGGGCCATAAAAGAGTGTACATTGTCCAATTCAATTCTTCGAATATGACCATCTCCTGTAGTTGTCAGATGTACGAATCTATGGATGGACAAAGGATGCAAAGAACGGAGTTGAGGCAAACAACGGTGACATTGCGAAGGAATACTTTAATGCGAAAGGCTTATGCTATAATCAGTAAAGGAGCAGAGACAACTAGTGGTAGTGACATTGCTATGCAGAAACTAATAGAAGTAGAAGAATTAATTGAAAAGAATATGAAGAAGTTATCTATTGCGGGAGTTCTTAAGGTTAGCTGTACTAATGCTTCTGCTAGTGGTGCTAACAAAAAAGATACTTCATTTGAGGAAACACCAGTACTAAATCCAGCAGGTGTGTGGCCAAAAGGCATGAGTAATAAAAGAAGAAAAGATGAAATGGAGAAGAAACAAAATAAAAAAGCACCCAAGGGCCAAGGTTCTAGAAAAGTCAAGCCACCGATCAGTGGAGGGCCTTCACATACATCACTTCATGTAGTGCATAATTCAAGCTTGTCTCACCCATTTGTTGCATCGAATGGTACAAATACCATTAATGAGCAATTTCCAACTATGAGCTTGCCATCAACTAATGTTTATGCTCCTTATGGTCTATATAATCAGAATCCTACTTCTATGTTGCCATTTTCTCAAGTCAATTTAACATATGCAAATACATGCAAATATGCATCAAGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

318

Amino Acids

35.61

Weight (kDa)

9.49

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	2 cut(s)	29, 174
AfaI	GTAC	5 cut(s)	260, 314, 538, 597, 799
AfiI	CCNNNNNNNGG	1 cut(s)	722
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	4 cut(s)	72, 274, 488, 765
AhlI	ACTAGT	1 cut(s)	434
AluBI	AGCT	5 cut(s)	152, 210, 534, 768, 834
AluI	AGCT	5 cut(s)	152, 210, 534, 768, 834
Alw26I	GTCTC	4 cut(s)	26, 80, 422, 777
AoxI	GGCC	4 cut(s)	244, 617, 688, 728
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	29, 174
AseI	ATTAAT	2 cut(s)	482, 810
AspS9I	GGNCC	3 cut(s)	244, 688, 728
AsuHPI	GGTGA	2 cut(s)	379, 767
AsuII	TTCGAA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	4 cut(s)	217, 299, 320, 847
BcoDI	GTCTC	4 cut(s)	26, 80, 422, 777
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	5 cut(s)	117, 207, 435, 552, 699
BfmI	CTRYAG	1 cut(s)	298
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	597
BmgT120I	GGNCC	3 cut(s)	244, 688, 728
BmsI	GCATC	5 cut(s)	46, 86, 327, 797, 953
BmtI	GCTAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	891
BsaJI	CCNNGG	2 cut(s)	684, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	2 cut(s)	371, 447
BseDI	CCNNGG	2 cut(s)	684, 691
BseGI	GGATG	2 cut(s)	331, 342
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMI	GCAATG	2 cut(s)	371, 447
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	4 cut(s)	246, 619, 690, 730
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmAI	GTCTC	4 cut(s)	26, 80, 422, 777
BsnI	GGCC	4 cut(s)	246, 619, 690, 730
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	159, 717
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	4 cut(s)	246, 619, 690, 730
BspCNI	CTCAG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	599
BspOI	GCTAGC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	371, 447
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	684, 691
BssMI	GATC	2 cut(s)	159, 717
BssT1I	CCWWGG	2 cut(s)	684, 691
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	150, 208, 836
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	331, 342
BstKTI	GATC	2 cut(s)	162, 720
BstMAI	GTCTC	4 cut(s)	26, 80, 422, 777
BstMBI	GATC	2 cut(s)	159, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 557
BstNSI	RCATGY	1 cut(s)	936
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	246, 619, 690, 730
BtsCI	GGATG	2 cut(s)	331, 342
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	4 cut(s)	14, 24, 222, 727
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	3 cut(s)	150, 208, 836
Cfr13I	GGNCC	3 cut(s)	244, 688, 728
Csp6I	GTAC	5 cut(s)	259, 313, 537, 596, 798
CviAII	CATG	3 cut(s)	628, 749, 933
CviQI	GTAC	5 cut(s)	259, 313, 537, 596, 798
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	2 cut(s)	161, 719
DpnII	GATC	2 cut(s)	159, 717
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	684, 691
EcoO109I	RGGNCCY	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	684, 691
EcoT22I	ATGCAT	1 cut(s)	946
ErhI	CCWWGG	2 cut(s)	684, 691
FaeI	CATG	3 cut(s)	631, 752, 936
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FatI	CATG	3 cut(s)	627, 748, 932
FauI	CCCGC	1 cut(s)	508
FauNDI	CATATG	1 cut(s)	922
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	338, 349
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	5 cut(s)	117, 207, 435, 552, 699
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	246, 619, 690, 730
Hin1II	CATG	3 cut(s)	631, 752, 936
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	3 cut(s)	19, 317, 880
HphI	GGTGA	2 cut(s)	379, 767
Hpy166II	GTNNAC	2 cut(s)	6, 259
Hpy188I	TCNGA	2 cut(s)	309, 879
Hpy188III	TCNNGA	1 cut(s)	699
Hpy8I	GTNNAC	2 cut(s)	6, 259
HpyAV	CCTTC	2 cut(s)	372, 741
HpyCH4III	ACNGT	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 557
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	631, 752, 936
Kzo9I	GATC	2 cut(s)	159, 717
LmnI	GCTCC	2 cut(s)	422, 862
LpnPI	CCDG	6 cut(s)	38, 138, 310, 594, 606, 618
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	5 cut(s)	46, 86, 327, 797, 953
MaeI	CTAG	5 cut(s)	117, 207, 435, 552, 699
MaeIII	GTNAC	2 cut(s)	367, 443
MalI	GATC	2 cut(s)	161, 719
MboI	GATC	2 cut(s)	159, 717
MboII	GAAGA	7 cut(s)	95, 232, 270, 488, 511, 654, 673
MlsI	TGGCCA	1 cut(s)	619
MluNI	TGGCCA	1 cut(s)	619
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	848
MnlI	CCTC	6 cut(s)	220, 232, 235, 348, 577, 719
Mox20I	TGGCCA	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	946
MscI	TGGCCA	1 cut(s)	619
MseI	TTAA	7 cut(s)	141, 234, 389, 482, 525, 810, 917
MslI	CAYNNNNRTG	2 cut(s)	42, 452
Msp20I	TGGCCA	1 cut(s)	619
MspCI	CTTAAG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	212, 557
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	2 cut(s)	159, 717
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	631, 752, 936
NmuCI	GTSAC	2 cut(s)	367, 443
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	1 cut(s)	936
NspV	TTCGAA	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	317, 880
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	2 cut(s)	482, 810
PsiI	TTATAA	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	244, 688, 728
RsaI	GTAC	5 cut(s)	260, 314, 538, 597, 799
RsaNI	GTAC	5 cut(s)	259, 313, 537, 596, 798
RseI	CAYNNNNRTG	2 cut(s)	42, 452
SaqAI	TTAA	7 cut(s)	141, 234, 389, 482, 525, 810, 917
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	159, 717
Sau96I	GGNCC	3 cut(s)	244, 688, 728
ScaI	AGTACT	1 cut(s)	597
SchI	GAGTC	1 cut(s)	28
SetI	ASST	9 cut(s)	115, 154, 212, 531, 536, 613, 697, 770, 836
SfaNI	GCATC	5 cut(s)	46, 86, 327, 797, 953
SfcI	CTRYAG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	281
SmiMI	CAYNNNNRTG	2 cut(s)	42, 452
SmlI	CTYRAG	2 cut(s)	524, 906
SmoI	CTYRAG	2 cut(s)	524, 906
SpeI	ACTAGT	1 cut(s)	434
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	5 cut(s)	117, 207, 435, 552, 699
StyI	CCWWGG	2 cut(s)	684, 691
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	94, 169, 281, 791
TatI	WGTACW	3 cut(s)	258, 536, 595
TfiI	GAWTC	2 cut(s)	317, 880
Tru1I	TTAA	7 cut(s)	141, 234, 389, 482, 525, 810, 917
Tru9I	TTAA	7 cut(s)	141, 234, 389, 482, 525, 810, 917
TscAI	CASTG	4 cut(s)	21, 31, 222, 727
TseFI	GTSAC	2 cut(s)	367, 443
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	367, 443
TspDTI	ATGAA	4 cut(s)	512, 567, 666, 737
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	21, 31, 222, 727
Vha464I	CTTAAG	1 cut(s)	524
VspI	ATTAAT	2 cut(s)	482, 810
XapI	RAATTY	2 cut(s)	29, 174
XbaI	TCTAGA	1 cut(s)	698
XceI	RCATGY	1 cut(s)	936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	5 cut(s)	117, 207, 435, 552, 699
ZrmI	AGTACT	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.