Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

41880871 .. 41881747

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACAAATGCCATTAAGAAGGTCTTTCCTGAGACATGTCATCAGTTATGTCTGTGGCACATATCAAAGAATGCGGTACAAAACTTAAATTGGTTGTATAGAAACCCTGATTTTAGTGAGCTTTTCATGAAGTTGTTTTTTGGACGTGTGACAGAAGATGAATTCAAGTCTACTTGGAATGAAATAATAGAGAAGTTTGATCTTGCAGGGAACACATGGCTCAAGACACTTTATGACTTTCGTGAAAAATGGTGTGCATTATTTAGCAAGGATACATTCTTTGCCGGAATATTATCTACACAAAGAAAACAAATGTGTTCAAGTGAATTGGAAAAGACTTTTCGATGCAATAACGGAATACCTTCTATGGCTGCAAAAAGTAATGGAATTCAGAAGCAAGTTGGTATGGTCTACACTAGAAAAATTTACAATTTATTTGAGTTTCAGTTTATCGCTAGCTTGGCAATGAAGATGGAGGAGGTTGGAAGTGATGGAATACTGCGGACATTTGAACTTAATGAGAAAGGCCATAAAAGTGTGTACATTTTATGTCGTCATGCTTTGAGGGTTTTAAACGTGAAAAATATTACTCAAATACTAACACACTATATACTAAAGAGATGGACAAAGGATGCAAAGAAAGGAGTTGAGGCAAATAGTGTACCCCTACAGGTCAAGGAGAAAACAACGGTGACATTGCGCAGGAATACTTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

239

Amino Acids

27.98

Weight (kDa)

9.51

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	701
AccI	GTMKAC	2 cut(s)	170, 411
AciI	CCGC	2 cut(s)	74, 502
AcsI	RAATTY	3 cut(s)	161, 387, 423
AfaI	GTAC	3 cut(s)	78, 542, 663
AflIII	ACRYGT	2 cut(s)	35, 145
AgsI	TTSAA	3 cut(s)	166, 321, 512
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	2 cut(s)	121, 459
AluI	AGCT	2 cut(s)	121, 459
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	3 cut(s)	161, 387, 423
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	702
AsuHPI	GGTGA	1 cut(s)	703
AsuNHI	GCTAGC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	466, 485, 615
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	417, 456
BfmI	CTRYAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	146
BmsI	GCATC	2 cut(s)	335, 622
BmtI	GCTAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	206
Bse3DI	GCAATG	2 cut(s)	471, 695
BseGI	GGATG	1 cut(s)	637
BseMI	GCAATG	2 cut(s)	471, 695
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	528
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	74, 502
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	471, 695
BsrGI	TGTACA	1 cut(s)	540
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	691
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	457
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	702
Csp6I	GTAC	3 cut(s)	77, 541, 662
CviAII	CATG	4 cut(s)	36, 127, 216, 557
CviJI	RGCY	5 cut(s)	121, 220, 371, 459, 528
CviKI_1	RGCY	5 cut(s)	121, 220, 371, 459, 528
CviQI	GTAC	3 cut(s)	77, 541, 662
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	573
EcoRI	GAATTC	2 cut(s)	161, 387
FaeI	CATG	4 cut(s)	39, 130, 219, 560
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	4 cut(s)	35, 126, 215, 556
FblI	GTMKAC	2 cut(s)	170, 411
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	417, 456
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	702
Hin1II	CATG	4 cut(s)	39, 130, 219, 560
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	4 cut(s)	171, 412, 541, 662
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	4 cut(s)	29, 127, 223, 242
Hpy8I	GTNNAC	4 cut(s)	171, 412, 541, 662
HpyAV	CCTTC	2 cut(s)	13, 372
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	2 cut(s)	145, 576
HpyCH4V	TGCA	5 cut(s)	206, 257, 348, 374, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	145, 576
Hsp92II	CATG	4 cut(s)	39, 130, 219, 560
HspAI	GCGC	1 cut(s)	700
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	42, 120, 192, 298, 656, 688
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	335, 622
MaeI	CTAG	2 cut(s)	417, 456
MaeII	ACGT	2 cut(s)	145, 576
MaeIII	GTNAC	2 cut(s)	148, 691
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	167, 481
MluCI	AATT	6 cut(s)	88, 161, 326, 387, 423, 430
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	4 cut(s)	469, 472, 558, 643
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	5 cut(s)	15, 86, 516, 572, 713
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	1 cut(s)	199
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	4 cut(s)	39, 130, 219, 560
NmuCI	GTSAC	2 cut(s)	148, 691
NsbI	TGCGCA	1 cut(s)	701
NspI	RCATGY	1 cut(s)	39
PagI	TCATGA	1 cut(s)	126
PciI	ACATGT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	35
RsaI	GTAC	3 cut(s)	78, 542, 663
RsaNI	GTAC	3 cut(s)	77, 541, 662
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	5 cut(s)	15, 86, 516, 572, 713
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	199
SetI	ASST	8 cut(s)	24, 123, 148, 364, 461, 483, 579, 675
SfaNI	GCATC	2 cut(s)	335, 622
SfcI	CTRYAG	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	88, 161, 326, 387, 423, 430
SsiI	CCGC	2 cut(s)	74, 502
SspI	AATATT	2 cut(s)	291, 586
SspMI	CTAG	2 cut(s)	417, 456
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	2 cut(s)	148, 579
TaqI	TCGA	1 cut(s)	343
TasI	AATT	6 cut(s)	88, 161, 326, 387, 423, 430
TatI	WGTACW	1 cut(s)	540
Tru1I	TTAA	5 cut(s)	15, 86, 516, 572, 713
Tru9I	TTAA	5 cut(s)	15, 86, 516, 572, 713
TseFI	GTSAC	2 cut(s)	148, 691
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	148, 691
TspDTI	ATGAA	5 cut(s)	115, 143, 174, 195, 482
TspGWI	ACGGA	1 cut(s)	369
XapI	RAATTY	3 cut(s)	161, 387, 423
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	170, 411
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	2 cut(s)	417, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.