Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

23692229 .. 23693984

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G223100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAAGAAAACACCAAAAGCAACGATAAAGAAAAAAAATCCAACGTTTGGAAATCTTGAAGAAACTTCCGATGAAAATTTGTATGGGAAGATTGTGTACAACGAGCAAGAAGCTTATGATCTCTATAATGAGTATGGTGCAAGCATTGGCCTTAGCATTCGAAGAAAACAAAAAAGATATGACAAATATGGAGTTGTGAGACAACTTAATTTTGTGTGTTCAAAAGAAGGTTTTAGAGAAGATAGTGACCCTTGTAAAGAGAAAGCAATTGATAGGCTAGAGACCAGAACAGGGTGCAAAGCCAAAATTCGATTTTTATTGGAAGGTGATGTGTGGAAATTTTCTACCTTTAATCCTGATCACAATCATAAGCTTGCACGACTAGATGAAAGACAATTTTTGCAATCAAATCGCGATGCTCAAAGCTTGATCAATCTTTTCAAGCACAAGCAGGTTGAAGATCCAGTGTTCTTTTACACAATGCAAATAGATCAAGAAAATCGAATGACAAACCTTTTTGGAGGGATGGATGCAATGGCAAATGCCATCTCCACAGTTTTTCTTGGGACATGTCATTTTTTATGCACATGGCACATATCAAGAAATGCAACATTGAAGTTGGCAAGTTCCTATGCCATTTCGGAGTTTAAGAGGTTATTCAACAAGTGTCTTGAAGGAGGTGAGACAAAGTTTAAATTTGAGTGTACTTGGAATGAAATGATTTCAGAGTTTGACCTTGCAGATAACACATGGCTTAAGACCTTATATCAGCTTCGTGAAAAGTGGTGTCCAGTATTTAGCCTAGATACTTTCACTGTCAGGATCAAAGCTTCTCAAAGAAGTCAGAGTATGAATAATGTTTTTCATCACATGTGTACTAAAACAATGAGACTTACTGAATTTGTGCATCATTATGATAAACAAACACATGGTATGCGGTCACGAGAGTTGGAAGAAACTTTTCGACATAATCAGGGATTACCTTCCAGAGCTGCCATAAAAAGTGGACTTCTACTTCATGCTGCTAATATCTATACTAGAAAAAAAAATATTTATTTGAGACTAAGTTGCAAGATGTTTGAATCCATGGGTTTATTATGTCGTCATGCTCTAAGGGTGTTGAATGTAAAAGAGGTTACTAAGATACCATCTCAGTACATATTGAAGCGGTGGACAAAAGAAGCAAAGAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

399

Amino Acids

46.72

Weight (kDa)

9.46

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccII	CGCG	1 cut(s)	414
AciI	CCGC	2 cut(s)	937, 1168
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	2 cut(s)	455, 830
AcsI	RAATTY	5 cut(s)	76, 306, 338, 695, 899
AfaI	GTAC	4 cut(s)	98, 706, 877, 1157
AfiI	CCNNNNNNNGG	2 cut(s)	47, 291
AflII	CTTAAG	1 cut(s)	755
AflIII	ACRYGT	2 cut(s)	569, 870
AluBI	AGCT	6 cut(s)	113, 373, 426, 772, 830, 992
AluI	AGCT	6 cut(s)	113, 373, 426, 772, 830, 992
Alw26I	GTCTC	5 cut(s)	193, 275, 677, 883, 1054
AlwI	GGATC	2 cut(s)	455, 830
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	992, 1022
ApoI	RAATTY	5 cut(s)	76, 306, 338, 695, 899
Asp700I	GAANNNNTTC	1 cut(s)	960
AsuHPI	GGTGA	2 cut(s)	338, 692
AsuII	TTCGAA	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BauI	CACGAG	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	979, 1009
BccI	CCATC	3 cut(s)	520, 554, 1156
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BclI	TGATCA	2 cut(s)	358, 429
BcoDI	GTCTC	5 cut(s)	193, 275, 677, 883, 1054
BfaI	CTAG	4 cut(s)	278, 383, 803, 1038
BfrI	CTTAAG	1 cut(s)	755
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	993, 1023
BlsI	GCNGC	2 cut(s)	994, 1024
BmsI	GCATC	3 cut(s)	406, 520, 916
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	1086
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 291
Bse1I	ACTGG	2 cut(s)	464, 791
Bse3DI	GCAATG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	531, 535
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	47, 291
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	1166
BseNI	ACTGG	2 cut(s)	464, 791
BseXI	GCAGC	2 cut(s)	979, 1009
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	47, 291
BsmAI	GTCTC	5 cut(s)	193, 275, 677, 883, 1054
BsmFI	GGGAC	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
Bsp19I	CCATGG	1 cut(s)	1086
Bsp68I	TCGCGA	1 cut(s)	414
BspACI	CCGC	2 cut(s)	937, 1168
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	1165
BspFNI	CGCG	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	2 cut(s)	455, 830
BspT104I	TTCGAA	1 cut(s)	160
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	540
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	464, 791
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
BssSI	CACGAG	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	1086
Bst2BI	CACGAG	1 cut(s)	942
Bst4CI	ACNGT	2 cut(s)	556, 817
BstAFI	CTTAAG	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	142, 375
BstDEI	CTNAG	5 cut(s)	152, 1064, 1112, 1140, 1152
BstDSI	CCRYGG	1 cut(s)	1086
BstF5I	GGATG	2 cut(s)	531, 535
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	6 cut(s)	121, 361, 432, 463, 493, 825
BstMAI	GTCTC	5 cut(s)	193, 275, 677, 883, 1054
BstMBI	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
BstNSI	RCATGY	2 cut(s)	573, 874
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	979, 1009
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	1086
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	531, 535
BtsIMutI	CAGTG	2 cut(s)	471, 813
BtuMI	TCGCGA	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	142, 375
Csp6I	GTAC	4 cut(s)	97, 705, 876, 1156
CviAII	CATG	8 cut(s)	570, 588, 750, 871, 929, 1019, 1087, 1106
CviQI	GTAC	4 cut(s)	97, 705, 876, 1156
DdeI	CTNAG	5 cut(s)	152, 1064, 1112, 1140, 1152
DpnI	GATC	6 cut(s)	120, 360, 431, 462, 492, 824
DpnII	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
DraI	TTTAAA	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	1086
Eco31I	GGTCTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	8 cut(s)	573, 591, 753, 874, 932, 1022, 1090, 1109
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	8 cut(s)	569, 587, 749, 870, 928, 1018, 1086, 1105
FbaI	TGATCA	2 cut(s)	358, 429
Fnu4HI	GCNGC	2 cut(s)	993, 1023
FokI	GGATG	2 cut(s)	538, 542
Fsp4HI	GCNGC	2 cut(s)	993, 1023
FspBI	CTAG	4 cut(s)	278, 383, 803, 1038
GluI	GCNGC	2 cut(s)	993, 1023
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	8 cut(s)	573, 591, 753, 874, 932, 1022, 1090, 1109
HindIII	AAGCTT	4 cut(s)	111, 371, 424, 828
HinfI	GANTC	1 cut(s)	1082
HphI	GGTGA	2 cut(s)	338, 692
Hpy166II	GTNNAC	5 cut(s)	97, 705, 876, 1007, 1173
Hpy188I	TCNGA	4 cut(s)	70, 643, 727, 846
Hpy8I	GTNNAC	5 cut(s)	97, 705, 876, 1007, 1173
HpyAV	CCTTC	4 cut(s)	221, 317, 668, 993
HpyCH4III	ACNGT	2 cut(s)	556, 817
HpyCH4IV	ACGT	1 cut(s)	44
HpyF3I	CTNAG	5 cut(s)	152, 1064, 1112, 1140, 1152
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	8 cut(s)	573, 591, 753, 874, 932, 1022, 1090, 1109
Ksp22I	TGATCA	2 cut(s)	358, 429
Kzo9I	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
LpnPI	CCDG	9 cut(s)	276, 298, 369, 437, 477, 804, 805, 959, 1000
Lsp1109I	GCAGC	2 cut(s)	979, 1009
LweI	GCATC	3 cut(s)	406, 520, 916
MaeI	CTAG	4 cut(s)	278, 383, 803, 1038
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	245, 939, 1135
MalI	GATC	6 cut(s)	120, 360, 431, 462, 492, 824
MboI	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
MboII	GAAGA	7 cut(s)	16, 71, 100, 174, 251, 470, 965
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	8 cut(s)	76, 208, 267, 306, 338, 395, 695, 899
MmeI	TCCRAC	2 cut(s)	65, 930
MnlI	CCTC	4 cut(s)	515, 645, 671, 1126
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	5 cut(s)	207, 351, 648, 693, 756
MslI	CAYNNNNRTG	1 cut(s)	912
MspCI	CTTAAG	1 cut(s)	755
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	156
MvnI	CGCG	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	1086
NdeII	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
NlaIII	CATG	8 cut(s)	573, 591, 753, 874, 932, 1022, 1090, 1109
NmuCI	GTSAC	2 cut(s)	245, 939
NruI	TCGCGA	1 cut(s)	414
NspI	RCATGY	2 cut(s)	573, 874
NspV	TTCGAA	1 cut(s)	160
PciI	ACATGT	2 cut(s)	569, 870
PctI	GAATGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	1 cut(s)	1082
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	994, 1024
PscI	ACATGT	2 cut(s)	569, 870
Psp1406I	AACGTT	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	460
RruI	TCGCGA	1 cut(s)	414
RsaI	GTAC	4 cut(s)	98, 706, 877, 1157
RsaNI	GTAC	4 cut(s)	97, 705, 876, 1156
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	5 cut(s)	207, 351, 648, 693, 756
SatI	GCNGC	2 cut(s)	993, 1023
Sau3AI	GATC	6 cut(s)	118, 358, 429, 460, 490, 822
SfaNI	GCATC	3 cut(s)	406, 520, 916
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	8 cut(s)	76, 208, 267, 306, 338, 395, 695, 899
SsiI	CCGC	2 cut(s)	937, 1168
SspI	AATATT	1 cut(s)	1051
SspMI	CTAG	4 cut(s)	278, 383, 803, 1038
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	2 cut(s)	556, 817
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	160, 310, 502, 964
TasI	AATT	8 cut(s)	76, 208, 267, 306, 338, 395, 695, 899
TatI	WGTACW	4 cut(s)	96, 704, 875, 1155
TfiI	GAWTC	1 cut(s)	1082
Tru1I	TTAA	5 cut(s)	207, 351, 648, 693, 756
Tru9I	TTAA	5 cut(s)	207, 351, 648, 693, 756
TscAI	CASTG	2 cut(s)	471, 820
TseFI	GTSAC	2 cut(s)	245, 939
TseI	GCWGC	2 cut(s)	992, 1022
Tsp45I	GTSAC	2 cut(s)	245, 939
TspDTI	ATGAA	7 cut(s)	17, 87, 402, 729, 854, 866, 1007
TspRI	CASTG	2 cut(s)	471, 820
Van91I	CCANNNNNTGG	1 cut(s)	47
Vha464I	CTTAAG	1 cut(s)	755
XapI	RAATTY	5 cut(s)	76, 306, 338, 695, 899
XceI	RCATGY	2 cut(s)	573, 874
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	4 cut(s)	278, 383, 803, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.