Rw4G003790

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004523
Physical Location & Seq
Forward (+)
7427629 .. 7430552
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003790.1

Sequence Viewer

Length: 1011 bp
ATGTCTACTAAAACACTGAGTCTCACTGAATTTGTGCATCATTATGATAAACAGGCAGAACAAATGCGTTCAAGTGAATTGGAAGAAACTTTTCGATGCAATAACGAAATACCTACTAGGGCTGCAAAAATTAGTGGAATTAAGAAGCAAGCTGGTATGTTTGAGTTTATCGCTAGCTTGGCAGTGAAGATGGAGGAAGTTGGAAGTGATGGGACATTGCAGACATTTGAGCTTAATGAGGAGGGCCATAAAAGAGTGTACATTGTCCAATTCAACTCTTCGAATCTTACCATCTCCTGTAGTTGTCAGATGTACGAATCTATTGGCTGGTTATGTCGTCATGCTTTGAGGGTTTTAAATGTGAATAATGTACCACTACATAACAAGGAGAAAACAACCGTGACATTGCGTAGGAATACTTTGATGCGAAAGGCTTATGGTATAATCAATAAGGGAGCAGAGACAACTAGTGATAGTGACATTGCGATGAAGAAACTGATAGAAGCAGAAGAATTAATTGAAAAGAATATGAAGAAGTTATCTATTGTGAGAGATGTCAATCAAGAAATCAATGAGATTTCGGGTGCCAATACTTCAAGTGGTGGTGCTAACAAAAATAATAATTTATTTGATGAAACGCCAATACTCAATCCAGCAGGTGTGTGGCCAAAAGGCATGAGTAATAAAAGAAGGAAAGACAAAATGGAGAAGAAACAAAATAAAAAAACACCAAAAGGCCAAGGTTATAGGAAAAGTATGCTACCAATCAGTGAAGGGCCTTCACATATATCACCTCATGGAGTCCATAATTCAAGCTTGCTTCACCCATTTGTTGCATCAAATGGTACAAGTACCATTAACCAGGTACAATGTCGAAGATACTTCTTGCCAACAACTAATGTTTATGCTCCTTACGCTCTATATAATCTTGTGCCGGCGACAGAGTCATCCTTCGACCCAGACCTAGAACCGGCGCCGACGTTCGAGGCTTTGACCGCCGGAGCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

336

Amino Acids

37.51

Weight (kDa)

8.92

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 89 - 121 1.2e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 647
AccB1I GGYRCC 2 cut(s) 584, 973
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 996
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 974
AfaI GTAC 6 cut(s) 260, 314, 372, 847, 853, 867
AfiI CCNNNNNNNGG 1 cut(s) 970
AgsI TTSAA 5 cut(s) 72, 274, 521, 597, 813
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 1 cut(s) 861
AluBI AGCT 5 cut(s) 152, 177, 232, 816, 1004
AluI AGCT 5 cut(s) 152, 177, 232, 816, 1004
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 2 cut(s) 26, 455
AoxI GGCC 4 cut(s) 244, 665, 736, 776
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 29
AseI ATTAAT 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 2 cut(s) 244, 776
AsuHPI GGTGA 2 cut(s) 783, 815
AsuII TTCGAA 1 cut(s) 281
AsuNHI GCTAGC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 667
BanI GGYRCC 2 cut(s) 584, 973
BanII GRGCYC 1 cut(s) 1006
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 1 cut(s) 109
BccI CCATC 3 cut(s) 184, 203, 299
BciT130I CCWGG 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 26, 455
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 4 cut(s) 117, 174, 468, 965
BfmI CTRYAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 977
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 863
BmgT120I GGNCC 2 cut(s) 244, 776
BmiI GGNNCC 2 cut(s) 586, 975
BmrFI CCNGG 1 cut(s) 863
BmsI GCATC 4 cut(s) 46, 86, 414, 845
BmtI GCTAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 974
BsaJI CCNNGG 1 cut(s) 739
Bsc4I CCNNNNNNNGG 1 cut(s) 970
Bse118I RCCGGY 2 cut(s) 934, 970
Bse3DI GCAATG 3 cut(s) 215, 404, 480
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 1 cut(s) 739
BseGI GGATG 1 cut(s) 947
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 970
BseMI GCAATG 3 cut(s) 215, 404, 480
BseMII CTCAG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 4 cut(s) 246, 667, 738, 778
BshNI GGYRCC 2 cut(s) 584, 973
BsiHKAI GWGCWC 1 cut(s) 1006
BsiSI CCGG 3 cut(s) 935, 971, 999
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 970
BsmAI GTCTC 2 cut(s) 26, 455
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 4 cut(s) 246, 667, 738, 778
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 1006
Bsp1407I TGTACA 1 cut(s) 258
BspACI CCGC 1 cut(s) 996
BspANI GGCC 4 cut(s) 246, 667, 738, 778
BspCNI CTCAG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 586, 975
BspMI ACCTGC 1 cut(s) 647
BspOI GCTAGC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 281
BspT107I GGYRCC 2 cut(s) 584, 973
BsrDI GCAATG 3 cut(s) 215, 404, 480
BsrFI RCCGGY 2 cut(s) 934, 970
BsrGI TGTACA 1 cut(s) 258
BssAI RCCGGY 2 cut(s) 934, 970
BssECI CCNNGG 1 cut(s) 739
BssNI GRCGYC 1 cut(s) 974
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 974
BstAUI TGTACA 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 150, 175, 818, 936
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 947
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 1 cut(s) 976
BstMAI GTCTC 2 cut(s) 26, 455
BstMWI GCNNNNNNNGC 3 cut(s) 179, 914, 995
BstNI CCWGG 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 246, 667, 738, 778
BtgZI GCGATG 1 cut(s) 500
BtsCI GGATG 1 cut(s) 947
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 4 cut(s) 14, 24, 189, 775
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 4 cut(s) 150, 175, 818, 936
CfoI GCGC 1 cut(s) 976
Cfr10I RCCGGY 2 cut(s) 934, 970
Cfr13I GGNCC 2 cut(s) 244, 776
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 6 cut(s) 259, 313, 371, 846, 852, 866
CviAII CATG 3 cut(s) 341, 676, 797
CviQI GTAC 6 cut(s) 259, 313, 371, 846, 852, 866
DdeI CTNAG 1 cut(s) 17
DinI GGCGCC 1 cut(s) 975
DraI TTTAAA 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 665
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 1004
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 1006
Eco53kI GAGCTC 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 1004
EcoO109I RGGNCCY 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 1006
EgeI GGCGCC 1 cut(s) 975
EheI GGCGCC 1 cut(s) 975
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 3 cut(s) 344, 679, 800
FaqI GGGAC 1 cut(s) 226
FatI CATG 3 cut(s) 340, 675, 796
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 934
FriOI GRGCYC 1 cut(s) 1006
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 4 cut(s) 117, 174, 468, 965
GlaI GCGC 1 cut(s) 975
GluI GCNGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 4 cut(s) 246, 667, 738, 778
HapII CCGG 3 cut(s) 935, 971, 999
HhaI GCGC 1 cut(s) 976
Hin1I GRCGYC 1 cut(s) 974
Hin1II CATG 3 cut(s) 344, 679, 800
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 5 cut(s) 19, 283, 317, 801, 944
HpaII CCGG 3 cut(s) 935, 971, 999
HphI GGTGA 2 cut(s) 783, 815
Hpy166II GTNNAC 2 cut(s) 6, 259
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 2 cut(s) 6, 259
Hpy99I CGWCG 1 cut(s) 982
HpyAV CCTTC 4 cut(s) 684, 767, 789, 961
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 5 cut(s) 37, 99, 125, 220, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 914, 995
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 980
Hsp92I GRCGYC 1 cut(s) 974
Hsp92II CATG 3 cut(s) 344, 679, 800
HspAI GCGC 1 cut(s) 974
KasI GGCGCC 1 cut(s) 973
KroI GCCGGC 1 cut(s) 934
KroNI GCCGGC 1 cut(s) 936
LmnI GCTCC 4 cut(s) 455, 913, 1001, 1009
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 4 cut(s) 46, 86, 414, 845
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 4 cut(s) 117, 174, 468, 965
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 2 cut(s) 400, 476
MboII GAAGA 8 cut(s) 95, 199, 270, 502, 521, 544, 721, 888
MhlI GDGCHC 1 cut(s) 1006
MlsI TGGCCA 1 cut(s) 667
MluCI AATT 9 cut(s) 29, 77, 129, 138, 269, 512, 516, 622, 808
MluNI TGGCCA 1 cut(s) 667
Mly113I GGCGCC 1 cut(s) 974
MlyI GAGTC 3 cut(s) 28, 810, 953
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 6 cut(s) 187, 232, 235, 342, 804, 979
Mox20I TGGCCA 1 cut(s) 667
MroNI GCCGGC 1 cut(s) 934
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 667
MseI TTAA 5 cut(s) 141, 234, 356, 515, 858
MslI CAYNNNNRTG 2 cut(s) 42, 485
Msp20I TGGCCA 1 cut(s) 667
MspI CCGG 3 cut(s) 935, 971, 999
MspR9I CCNGG 1 cut(s) 863
MvaI CCWGG 1 cut(s) 863
MwoI GCNNNNNNNGC 3 cut(s) 179, 914, 995
NaeI GCCGGC 1 cut(s) 936
NarI GGCGCC 1 cut(s) 974
NgoMIV GCCGGC 1 cut(s) 934
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 344, 679, 800
NlaIV GGNNCC 2 cut(s) 586, 975
NmuCI GTSAC 2 cut(s) 400, 476
NspV TTCGAA 1 cut(s) 281
PaqCI CACCTGC 1 cut(s) 647
PdiI GCCGGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 283, 317
PflFI GACNNNGTC 1 cut(s) 943
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 3 cut(s) 27, 809, 952
PluTI GGCGCC 1 cut(s) 977
PpsI GAGTC 3 cut(s) 27, 809, 952
PshBI ATTAAT 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 1006
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 2 cut(s) 586, 975
PspPI GGNCC 2 cut(s) 244, 776
PsyI GACNNNGTC 1 cut(s) 943
RsaI GTAC 6 cut(s) 260, 314, 372, 847, 853, 867
RsaNI GTAC 6 cut(s) 259, 313, 371, 846, 852, 866
RseI CAYNNNNRTG 2 cut(s) 42, 485
SacI GAGCTC 1 cut(s) 1006
SaqAI TTAA 5 cut(s) 141, 234, 356, 515, 858
SatI GCNGC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 244, 776
SchI GAGTC 3 cut(s) 28, 810, 953
ScrFI CCNGG 1 cut(s) 863
SduI GDGCHC 1 cut(s) 1006
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 4 cut(s) 46, 86, 414, 845
SfcI CTRYAG 1 cut(s) 298
SfoI GGCGCC 1 cut(s) 975
SfuI TTCGAA 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 42, 485
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 9 cut(s) 29, 77, 129, 138, 269, 512, 516, 622, 808
SsiI CCGC 1 cut(s) 996
SspDI GGCGCC 1 cut(s) 973
SspMI CTAG 4 cut(s) 117, 174, 468, 965
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 983
TaqI TCGA 5 cut(s) 94, 281, 874, 954, 984
TasI AATT 9 cut(s) 29, 77, 129, 138, 269, 512, 516, 622, 808
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 283, 317
Tru1I TTAA 5 cut(s) 141, 234, 356, 515, 858
Tru9I TTAA 5 cut(s) 141, 234, 356, 515, 858
TscAI CASTG 4 cut(s) 21, 31, 189, 775
TseFI GTSAC 2 cut(s) 400, 476
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 400, 476
TspDTI ATGAA 3 cut(s) 503, 545, 648
TspRI CASTG 4 cut(s) 21, 31, 189, 775
Tth111I GACNNNGTC 1 cut(s) 943
VspI ATTAAT 1 cut(s) 515
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 660
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 4 cut(s) 117, 174, 468, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.