Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

16002759 .. 16004090

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCTACTAAAACACTGAGTCTCACTGAATTTGTGCATCATTATGATAAACAGGCAGAACAAATGCGTTCAAGTGAATTGGAAGAGACTTTTCGATGCAATAACGGAATACCTACTAGGGCTGCAAAAAGTAGTGGAATTAAGAAGCAAGCTAGTATGGTCTACACTCGAAAAATTTATAATTTATTTGAGTTTGAGTTTATCGCTAGCTTGGCAGTGAAGATGGAGGAAGTTGGAAGTGATGGGACATTGCAGACATTTGAGCTTAATGAGGAGGGCCATAAAAGAGTGTACATTGTCCAATTCAATTCTTCGAATCTGACCATCTCTTGTAGTTGTCAGATGTACGAATCTATGGGAGTTGAGGCAAATAGTGTACCAGTACAAGTCAAGGAGAAAACAACGGTGACATTGCGAAGGAATACTTTAATGCGAAAGGCTTATAGTATAATTAGTAAGGGAGCAGAGACAACTAGTGGTAGTGACATTGCTATGCAGAAACTAATAGAAGCAGAAGAATTAATTGAAAAGAATATGAAGAAGTTATCTATTGCGGGAGTTCTTAAGGTTAGCTGTACTAATGCTTCTGCTAGTGGTGCAAACAAAAATGATACTTCATTTGAGGAAACACCAGTACTAAATCCAGCAGGTGTGTGGCCAAAAGGCATGAGTAATAAAAGAAGAAAAGATGAAATGGAGAAGAAACAAAATAAAAAAGCACCCAAGGGCCAAGGTTCTAGAAAAGTCAAGCCACCGATCAGTGGAGGGCCTTCACACACATCACTTCATGTAGTGCATAATTCAAGCTTGTCTCACCCATTTGTTGCATCGAATGGTACAAATACCATTAATGAGCAATTTCCAACTATGAGCTTGCCAACAACTAATGTTTATGCTCCTTATGGTCTATATAATCAGAATCCTACTTCTATGTTGCCATTTTCTCAAGTCAATTTAACATATGCAAATATGCATCAAGGGGGTAACTATATCACACAATTGAATCAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

337

Amino Acids

37.34

Weight (kDa)

9.22

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AarI	CACCTGC	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	638
AccI	GTMKAC	2 cut(s)	5, 162
AciI	CCGC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	2 cut(s)	29, 174
AfaI	GTAC	7 cut(s)	293, 347, 378, 384, 577, 636, 838
AfiI	CCNNNNNNNGG	1 cut(s)	761
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	72, 307, 527, 804, 1003
AhlI	ACTAGT	1 cut(s)	473
AluBI	AGCT	6 cut(s)	152, 210, 265, 573, 807, 873
AluI	AGCT	6 cut(s)	152, 210, 265, 573, 807, 873
Alw26I	GTCTC	4 cut(s)	26, 80, 461, 816
AoxI	GGCC	4 cut(s)	277, 656, 727, 767
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	29, 174
AseI	ATTAAT	2 cut(s)	521, 849
AspS9I	GGNCC	3 cut(s)	277, 727, 767
AsuHPI	GGTGA	2 cut(s)	418, 806
AsuII	TTCGAA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	658
BarI	GAAGNNNNNNTAC	2 cut(s)	568, 600
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	3 cut(s)	217, 236, 332
BcoDI	GTCTC	4 cut(s)	26, 80, 461, 816
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	6 cut(s)	117, 153, 207, 474, 591, 738
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	277, 727, 767
BmsI	GCATC	4 cut(s)	46, 86, 836, 982
BmtI	GCTAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	930
BsaJI	CCNNGG	2 cut(s)	723, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	380, 632
Bse3DI	GCAATG	3 cut(s)	248, 410, 486
BseDI	CCNNGG	2 cut(s)	723, 730
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMI	GCAATG	3 cut(s)	248, 410, 486
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	2 cut(s)	380, 632
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	4 cut(s)	279, 658, 729, 769
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	4 cut(s)	26, 80, 461, 816
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	279, 658, 729, 769
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	756
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	4 cut(s)	279, 658, 729, 769
BspCNI	CTCAG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	3 cut(s)	248, 410, 486
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	380, 632
BssECI	CCNNGG	2 cut(s)	723, 730
BssMI	GATC	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	723, 730
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	150, 208, 875
BstDEI	CTNAG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	759
BstMAI	GTCTC	4 cut(s)	26, 80, 461, 816
BstMBI	GATC	1 cut(s)	756
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 596
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	279, 658, 729, 769
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	4 cut(s)	14, 24, 222, 766
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	3 cut(s)	150, 208, 875
Cfr13I	GGNCC	3 cut(s)	277, 727, 767
Csp6I	GTAC	7 cut(s)	292, 346, 377, 383, 576, 635, 837
CviAII	CATG	2 cut(s)	667, 788
CviQI	GTAC	7 cut(s)	292, 346, 377, 383, 576, 635, 837
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	758
DpnII	GATC	1 cut(s)	756
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	723, 730
EcoO109I	RGGNCCY	1 cut(s)	767
EcoT14I	CCWWGG	2 cut(s)	723, 730
EcoT22I	ATGCAT	1 cut(s)	975
ErhI	CCWWGG	2 cut(s)	723, 730
FaeI	CATG	2 cut(s)	670, 791
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	666, 787
FauI	CCCGC	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	961
FblI	GTMKAC	2 cut(s)	5, 162
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	6 cut(s)	117, 153, 207, 474, 591, 738
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	279, 658, 729, 769
Hin1II	CATG	2 cut(s)	670, 791
HindIII	AAGCTT	1 cut(s)	805
HinfI	GANTC	5 cut(s)	19, 316, 350, 919, 1003
HphI	GGTGA	2 cut(s)	418, 806
Hpy166II	GTNNAC	4 cut(s)	6, 163, 292, 377
Hpy188I	TCNGA	3 cut(s)	321, 342, 918
Hpy188III	TCNNGA	1 cut(s)	738
Hpy8I	GTNNAC	4 cut(s)	6, 163, 292, 377
HpyAV	CCTTC	2 cut(s)	411, 780
HpyCH4III	ACNGT	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 596
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	670, 791
Kzo9I	GATC	1 cut(s)	756
LmnI	GCTCC	2 cut(s)	461, 901
LpnPI	CCDG	6 cut(s)	38, 393, 633, 645, 657, 992
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	4 cut(s)	46, 86, 836, 982
MaeI	CTAG	6 cut(s)	117, 153, 207, 474, 591, 738
MaeIII	GTNAC	3 cut(s)	406, 482, 983
MalI	GATC	1 cut(s)	758
MboI	GATC	1 cut(s)	756
MboII	GAAGA	7 cut(s)	95, 232, 303, 527, 550, 693, 712
MfeI	CAATTG	1 cut(s)	998
MlsI	TGGCCA	1 cut(s)	658
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	214, 887
MnlI	CCTC	6 cut(s)	220, 265, 268, 358, 616, 758
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	7 cut(s)	141, 267, 428, 521, 564, 849, 956
MslI	CAYNNNNRTG	2 cut(s)	42, 491
Msp20I	TGGCCA	1 cut(s)	658
MspCI	CTTAAG	1 cut(s)	563
MunI	CAATTG	1 cut(s)	998
MwoI	GCNNNNNNNGC	2 cut(s)	212, 596
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	1 cut(s)	756
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	670, 791
NmuCI	GTSAC	2 cut(s)	406, 482
NsiI	ATGCAT	1 cut(s)	975
NspV	TTCGAA	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	638
PfeI	GAWTC	4 cut(s)	316, 350, 919, 1003
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	2 cut(s)	521, 849
PsiI	TTATAA	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	277, 727, 767
RsaI	GTAC	7 cut(s)	293, 347, 378, 384, 577, 636, 838
RsaNI	GTAC	7 cut(s)	292, 346, 377, 383, 576, 635, 837
RseI	CAYNNNNRTG	2 cut(s)	42, 491
SaqAI	TTAA	7 cut(s)	141, 267, 428, 521, 564, 849, 956
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	756
Sau96I	GGNCC	3 cut(s)	277, 727, 767
ScaI	AGTACT	1 cut(s)	636
SchI	GAGTC	1 cut(s)	28
SfaNI	GCATC	4 cut(s)	46, 86, 836, 982
SfuI	TTCGAA	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	42, 491
SmlI	CTYRAG	2 cut(s)	563, 945
SmoI	CTYRAG	2 cut(s)	563, 945
SpeI	ACTAGT	1 cut(s)	473
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	6 cut(s)	117, 153, 207, 474, 591, 738
StyI	CCWWGG	2 cut(s)	723, 730
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	4 cut(s)	94, 169, 314, 830
TatI	WGTACW	4 cut(s)	291, 382, 575, 634
TfiI	GAWTC	4 cut(s)	316, 350, 919, 1003
Tru1I	TTAA	7 cut(s)	141, 267, 428, 521, 564, 849, 956
Tru9I	TTAA	7 cut(s)	141, 267, 428, 521, 564, 849, 956
TscAI	CASTG	4 cut(s)	21, 31, 222, 766
TseFI	GTSAC	2 cut(s)	406, 482
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	406, 482
TspDTI	ATGAA	4 cut(s)	551, 606, 705, 776
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	4 cut(s)	21, 31, 222, 766
Vha464I	CTTAAG	1 cut(s)	563
VspI	ATTAAT	2 cut(s)	521, 849
XapI	RAATTY	2 cut(s)	29, 174
XbaI	TCTAGA	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XmiI	GTMKAC	2 cut(s)	5, 162
XspI	CTAG	6 cut(s)	117, 153, 207, 474, 591, 738
ZrmI	AGTACT	1 cut(s)	636
Zsp2I	ATGCAT	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.