FvH4_5g35621

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004523
Physical Location & Seq
Reverse (-)
26068881 .. 26069869
989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35621.t1

Sequence Viewer

Length: 783 bp
ATGGCATTCAAGGTGGATGAAGTTGATACTGATGGTACAAGACATACTTTTGAATTGAGTCAAGAGGGTCGCAATAGAATTTATGTTGTAAAGCTGAACTCTTCAGATAACACAGTCACATGTAGCTGCAAGATGTTTGAATCTATGGGATTGTTGTGTCGTCATGCTCTAAGGGTATTGAATGTGAGGAATGTTACTAAGATACCACCGCAATATATATTGAAGCGTTGGACAAAGGATGCAAAATCAGAAATTGGGGCACAAGAACATGAAGCATTATTGCAACAAAAGGATAAATCATCAGTTGTGTTGCGTCGAAATAATATGGTTCGAAAAGCATATGACATATTGAGCAAGGCTGCAATGACAGAGAAAGCTAGTAAAATAGCAATGGAAAAGTTGAAAGAGATGGAAGAGTTACTTGAAAAGGATGAGGTAGAGCCAAAAGGATCTGGTCAAGAATATGAGGTAGAGACAAAGGGATCTGGTCACAAAGAAAGCAACGAGGCTTTGAATGATGATAATATTTCGGATGATAATGAAAGTGGTTGCGAAGTTGATGAGACACCAGTATTGGATCCGCCATGTGCAAAGACAAAAGGGATGAGTAATGCTAGATGGAAATCATCTGTGGAGAAGCGTAACAAGAATGCATCTAAGAATAAGGTGTCATCTAGTAAAAAAGGTGATGCGGCAAAGCAACAAAAACAAAAGCAATCAGAAGATCCAGTGTTGTCAAGCAAAGGTTTTGAACTCATATTCCTCATGTCATGCACAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

261

Amino Acids

29.23

Weight (kDa)

8.1

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 29 - 63 7.8e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 209, 581, 692
AclWI GGATC 5 cut(s) 457, 490, 572, 585, 719
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 9 cut(s) 10, 53, 140, 181, 223, 403, 425, 514, 752
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
AluBI AGCT 3 cut(s) 94, 126, 377
AluI AGCT 3 cut(s) 94, 126, 377
Alw26I GTCTC 2 cut(s) 467, 557
AlwI GGATC 5 cut(s) 457, 490, 572, 585, 719
ApeKI GCWGC 2 cut(s) 126, 359
ApoI RAATTY 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 698
AsuII TTCGAA 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 262
BamHI GGATCC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 113, 346
BccI CCATC 3 cut(s) 26, 403, 612
BcoDI GTCTC 2 cut(s) 467, 557
BfaI CTAG 3 cut(s) 378, 615, 675
BisI GCNGC 3 cut(s) 127, 360, 693
BlsI GCNGC 3 cut(s) 128, 361, 694
BmiI GGNNCC 1 cut(s) 579
BmsI GCATC 3 cut(s) 229, 662, 679
Bpu14I TTCGAA 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 622
Bse1I ACTGG 2 cut(s) 569, 728
Bse3DI GCAATG 2 cut(s) 369, 396
Bse8I GATNNNNATC 1 cut(s) 622
BseGI GGATG 5 cut(s) 22, 244, 436, 538, 609
BseJI GATNNNNATC 1 cut(s) 622
BseMI GCAATG 2 cut(s) 369, 396
BseNI ACTGG 2 cut(s) 569, 728
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 2 cut(s) 113, 346
BsmAI GTCTC 2 cut(s) 467, 557
BsmI GAATGC 2 cut(s) 5, 655
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 4 cut(s) 449, 482, 577, 724
BspACI CCGC 3 cut(s) 209, 581, 692
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 5 cut(s) 457, 490, 572, 585, 719
BspT104I TTCGAA 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 369, 396
BsrI ACTGG 2 cut(s) 569, 728
BssMI GATC 4 cut(s) 449, 482, 577, 724
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 2 cut(s) 106, 408
BstBI TTCGAA 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 170, 198, 657
BstF5I GGATG 5 cut(s) 22, 244, 436, 538, 609
BstKTI GATC 4 cut(s) 452, 485, 580, 727
BstMAI GTCTC 2 cut(s) 467, 557
BstMBI GATC 4 cut(s) 449, 482, 577, 724
BstNSI RCATGY 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 113, 346
BstX2I RGATCY 4 cut(s) 449, 482, 577, 724
BstYI RGATCY 4 cut(s) 449, 482, 577, 724
BtsCI GGATG 5 cut(s) 22, 244, 436, 538, 609
BtsIMutI CAGTG 1 cut(s) 735
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 36
CviAII CATG 6 cut(s) 120, 164, 269, 585, 766, 771
CviJI RGCY 6 cut(s) 94, 126, 359, 377, 442, 509
CviKI_1 RGCY 6 cut(s) 94, 126, 359, 377, 442, 509
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 3 cut(s) 170, 198, 657
DpnI GATC 4 cut(s) 451, 484, 579, 726
DpnII GATC 4 cut(s) 449, 482, 577, 724
Eam1104I CTCTTC 2 cut(s) 106, 408
EarI CTCTTC 2 cut(s) 106, 408
EciI GGCGGA 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 655
FaeI CATG 6 cut(s) 123, 167, 272, 588, 769, 774
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 405, 437
FatI CATG 6 cut(s) 119, 163, 268, 584, 765, 770
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 127, 360, 693
FokI GGATG 5 cut(s) 29, 251, 443, 545, 616
Fsp4HI GCNGC 3 cut(s) 127, 360, 693
FspBI CTAG 3 cut(s) 378, 615, 675
GluI GCNGC 3 cut(s) 127, 360, 693
HgaI GACGC 1 cut(s) 302
Hin1II CATG 6 cut(s) 123, 167, 272, 588, 769, 774
HinfI GANTC 2 cut(s) 58, 140
HphI GGTGA 1 cut(s) 698
Hpy188I TCNGA 4 cut(s) 106, 250, 532, 721
Hpy188III TCNNGA 2 cut(s) 62, 458
Hpy99I CGWCG 1 cut(s) 318
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 7 cut(s) 129, 242, 283, 362, 590, 653, 774
HpyF3I CTNAG 3 cut(s) 170, 198, 657
Hsp92II CATG 6 cut(s) 123, 167, 272, 588, 769, 774
Kzo9I GATC 4 cut(s) 449, 482, 577, 724
LpnPI CCDG 4 cut(s) 438, 471, 582, 741
Lsp1109I GCAGC 2 cut(s) 113, 346
LweI GCATC 3 cut(s) 229, 662, 679
MaeI CTAG 3 cut(s) 378, 615, 675
MaeIII GTNAC 5 cut(s) 115, 193, 417, 488, 641
MalI GATC 4 cut(s) 451, 484, 579, 726
MboI GATC 4 cut(s) 449, 482, 577, 724
MboII GAAGA 3 cut(s) 93, 425, 734
MflI RGATCY 4 cut(s) 449, 482, 577, 724
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 3 cut(s) 53, 78, 252
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 6 cut(s) 58, 180, 427, 460, 499, 773
Mph1103I ATGCAT 1 cut(s) 655
Mva1269I GAATGC 2 cut(s) 5, 655
NdeI CATATG 1 cut(s) 340
NdeII GATC 4 cut(s) 449, 482, 577, 724
NlaIII CATG 6 cut(s) 123, 167, 272, 588, 769, 774
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 2 cut(s) 115, 488
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 1 cut(s) 123
NspV TTCGAA 1 cut(s) 331
PciI ACATGT 1 cut(s) 119
PctI GAATGC 2 cut(s) 5, 655
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 128, 361, 694
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PscI ACATGT 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 579
PsuI RGATCY 4 cut(s) 449, 482, 577, 724
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SatI GCNGC 3 cut(s) 127, 360, 693
Sau3AI GATC 4 cut(s) 449, 482, 577, 724
SchI GAGTC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 262
SetI ASST 9 cut(s) 15, 96, 128, 379, 438, 471, 669, 688, 748
SfaNI GCATC 3 cut(s) 229, 662, 679
SfuI TTCGAA 1 cut(s) 331
Sse9I AATT 3 cut(s) 53, 78, 252
SsiI CCGC 3 cut(s) 209, 581, 692
SspI AATATT 1 cut(s) 526
SspMI CTAG 3 cut(s) 378, 615, 675
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 316, 331
TasI AATT 3 cut(s) 53, 78, 252
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 2 cut(s) 115, 488
TseI GCWGC 2 cut(s) 126, 359
Tsp45I GTSAC 2 cut(s) 115, 488
TspDTI ATGAA 3 cut(s) 33, 285, 555
TspRI CASTG 1 cut(s) 735
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 123
XspI CTAG 3 cut(s) 378, 615, 675
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.