Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000685.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

67556 .. 67861

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000685.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggttcgaaaagcttatgatatattgagcaaggctgcaatgacagagaaaggtagtaaaattgcaatgcaaaagttgaaagagatggaagaattaattgaaaaggatgagctagagtcaaaaggatttgatcacaaagaaagcaataaggctttgaatgatgatgttatttatgatgataatgaaagtggctgcccagttaatgagacaccagtattggatcccccatgtgcaaggccaaaagggatgagtaatgatagatggaaagcaagcgtatgtggagaagcgaaacaagaaaacatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

101

Amino Acids

11.33

Weight (kDa)

4.93

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	215, 228
AgsI	TTSAA	3 cut(s)	79, 101, 157
AluBI	AGCT	2 cut(s)	14, 112
AluI	AGCT	2 cut(s)	14, 112
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	215, 228
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	35, 192
AseI	ATTAAT	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	22, 179
BccI	CCATC	2 cut(s)	79, 255
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	36, 193
BlsI	GCNGC	2 cut(s)	37, 194
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	197, 212
Bse3DI	GCAATG	2 cut(s)	45, 72
BseGI	GGATG	2 cut(s)	112, 252
BseMI	GCAATG	2 cut(s)	45, 72
BseNI	ACTGG	2 cut(s)	197, 212
BseXI	GCAGC	2 cut(s)	22, 179
BshFI	GGCC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	130, 220
BspANI	GGCC	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	215, 228
BspT104I	TTCGAA	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	45, 72
BsrI	ACTGG	2 cut(s)	197, 212
BssMI	GATC	2 cut(s)	130, 220
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	112, 252
BstKTI	GATC	2 cut(s)	133, 223
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	130, 220
BstV1I	GCAGC	2 cut(s)	22, 179
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	112, 252
Cac8I	GCNNGC	1 cut(s)	271
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	6 cut(s)	14, 35, 112, 152, 192, 238
CviKI_1	RGCY	6 cut(s)	14, 35, 112, 152, 192, 238
DpnI	GATC	2 cut(s)	132, 222
DpnII	GATC	2 cut(s)	130, 220
FaeI	CATG	1 cut(s)	231
FaiI	YATR	5 cut(s)	18, 23, 174, 229, 277
FatI	CATG	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	36, 193
FokI	GGATG	2 cut(s)	119, 259
Fsp4HI	GCNGC	2 cut(s)	36, 193
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	36, 193
HaeIII	GGCC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	38, 65, 70, 233
Hsp92II	CATG	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 220
LpnPI	CCDG	2 cut(s)	210, 225
Lsp1109I	GCAGC	2 cut(s)	22, 179
MaeI	CTAG	1 cut(s)	113
MalI	GATC	2 cut(s)	132, 222
MboI	GATC	2 cut(s)	130, 220
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	3 cut(s)	60, 92, 96
MlyI	GAGTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	95, 201
NdeII	GATC	2 cut(s)	130, 220
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	37, 194
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	95, 201
SatI	GCNGC	2 cut(s)	36, 193
Sau3AI	GATC	2 cut(s)	130, 220
SchI	GAGTC	1 cut(s)	125
SetI	ASST	3 cut(s)	16, 55, 114
SfuI	TTCGAA	1 cut(s)	7
SgeI	CNNG	7 cut(s)	43, 125, 209, 224, 240, 246, 282
Sse9I	AATT	3 cut(s)	60, 92, 96
SspMI	CTAG	1 cut(s)	113
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	60, 92, 96
Tru1I	TTAA	2 cut(s)	95, 201
Tru9I	TTAA	2 cut(s)	95, 201
TseI	GCWGC	2 cut(s)	35, 192
TspDTI	ATGAA	1 cut(s)	198
VspI	ATTAAT	1 cut(s)	95
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.