Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004821.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

36211 .. 38376

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004821.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

atgcctacattaattgacatagaagacgatggagaacatagcatgggaactgctttgggaaaagattcaatgtttgtgaatcgtcaaactagtaatgatgatgacttgtatggagtgattgtgaatagtgaggaagaagcatataaccactactgtgagtatggtgctagaatggggtttagtgttcggataatgcagaggaggaaaaccaacaatgttgtgaagcaagttaattattgttgttcaaaagaaggttttaaactagatagtgatccttcagaagtgaaaaaggcagataggctggacattagaactggttgtacagcaaaaattcgatttggattgcaagataacaatttatggaaagcgactctctttgtccctgaacacaaccataagcttgcagagctagaagaaagacaatttttgcgctccaatcgaaaagtttcaaatgctcatcagggggtgattagatcaatgaaaaccgcaggtatgagtacgataaatacatattcatatttagcagaagaagttgggggatctcaaaatgttggatttacaaagactgactactacaattttaagttgctttttagacgtgtgacagaagatgaatttgagtctacttgggatgaaataatacagaagtttgaccttgcagggaacacatggctccagacactctataatcttcgtgaaaaatggtgtgcattatttagcaaagatacattttctgccggaatattatctacacaaagaagtgagagcacaaacaatgtgtttaccctcatgtctactaaaacactgagtctcactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaagtgaattggaagagacttttcgatgcaataacgggatacctactagggctgcaaaaagtagtggaattaagaagcaagctggtatggtctacactcgaaaaatttataatttatttgagtttgagtttatcgctagcttggcagtgaagatggaggaagttggaagtgatgggacattgcagacatttgagcttaatgaggagggccataaaagagtgtacattgtccaattcaattcttcgaatctgaccatctcctgtagttgtcagatgtacgaatctatgggctggttatgtcgtcatgctttgagggttttgaatgtgaaaaatattactcaaataccgatacagtatatactaaagagatggacaaaggacgcaaagaaaggagttgaggcaaatagtgtaccagtacaagttaaggagaaaacaacggtgacattgcgaaggaatactttaatgcgaaaggcttatagtataatcagtaagggagcagagacaactagtggtagtgaaattgctatgcaaaaactaaaagaagcagaagaattaattaaaaagaatatgaagaatttatctattgctggagttcttaaggttagctgtactaatgcttctgctagtggtgctaacaaaaatgatacttcatttgaggaaacaccagtactaaatccagcaggtgtgtggccaaaaggcataagtaataaaagaagaaaagatgaaatggagaagaaacaaaataaaaaagcacccaagagccaaggttctagtaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

545

Amino Acids

61.93

Weight (kDa)

9.05

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	969
AarI	CACCTGC	1 cut(s)	1529
Acc36I	ACCTGC	2 cut(s)	479, 1529
AccI	GTMKAC	3 cut(s)	623, 794, 951
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	2 cut(s)	266, 547
AcoI	YGGCCR	1 cut(s)	1547
AcsI	RAATTY	5 cut(s)	330, 614, 818, 963, 1432
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	8 cut(s)	322, 499, 1082, 1136, 1269, 1275, 1468, 1527
AflII	CTTAAG	1 cut(s)	1454
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	6 cut(s)	69, 246, 450, 861, 1096, 1180
AhlI	ACTAGT	2 cut(s)	89, 1364
AjiI	CACGTC	1 cut(s)	599
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	6 cut(s)	400, 409, 941, 999, 1054, 1464
AluI	AGCT	6 cut(s)	400, 409, 941, 999, 1054, 1464
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	3 cut(s)	815, 869, 1352
AlwI	GGATC	2 cut(s)	266, 547
AoxI	GGCC	2 cut(s)	1066, 1547
ApeKI	GCWGC	1 cut(s)	911
ApoI	RAATTY	5 cut(s)	330, 614, 818, 963, 1432
AseI	ATTAAT	2 cut(s)	11, 1412
Asp700I	GAANNNNTTC	2 cut(s)	64, 445
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	2 cut(s)	478, 1309
AsuII	TTCGAA	1 cut(s)	1103
AsuNHI	GCTAGC	1 cut(s)	995
BalI	TGGCCA	1 cut(s)	1549
BarI	GAAGNNNNNNTAC	2 cut(s)	1459, 1491
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	898
BccI	CCATC	5 cut(s)	23, 1006, 1025, 1121, 1221
BciVI	GTATCC	1 cut(s)	891
BcoDI	GTCTC	3 cut(s)	815, 869, 1352
BcuI	ACTAGT	2 cut(s)	89, 1364
BfaI	CTAG	9 cut(s)	90, 168, 263, 410, 906, 996, 1365, 1482, 1629
BfmI	CTRYAG	1 cut(s)	1120
BfrI	CTTAAG	1 cut(s)	1454
BfuAI	ACCTGC	2 cut(s)	479, 1529
BfuI	GTATCC	1 cut(s)	891
BisI	GCNGC	1 cut(s)	912
BlsI	GCNGC	1 cut(s)	913
BmcAI	AGTACT	1 cut(s)	1527
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	1 cut(s)	674
BmsI	GCATC	2 cut(s)	835, 875
BmtI	GCTAGC	1 cut(s)	999
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	659, 1467
Bpu14I	TTCGAA	1 cut(s)	1103
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	1621
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse1I	ACTGG	3 cut(s)	319, 1271, 1523
Bse3DI	GCAATG	2 cut(s)	1037, 1301
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	1621
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	270
BseMI	GCAATG	2 cut(s)	1037, 1301
BseMII	CTCAG	1 cut(s)	797
BseNI	ACTGG	3 cut(s)	319, 1271, 1523
BseRI	GAGGAG	2 cut(s)	214, 1076
BseXI	GCAGC	1 cut(s)	898
BshFI	GGCC	2 cut(s)	1068, 1549
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	738
BslFI	GGGAC	2 cut(s)	365, 1048
BsmAI	GTCTC	3 cut(s)	815, 869, 1352
BsmFI	GGGAC	2 cut(s)	365, 1048
BsnI	GGCC	2 cut(s)	1068, 1549
Bsp119I	TTCGAA	1 cut(s)	1103
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp1407I	TGTACA	2 cut(s)	320, 1080
Bsp143I	GATC	3 cut(s)	271, 473, 539
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	2 cut(s)	1068, 1549
BspCNI	CTCAG	1 cut(s)	798
BspLI	GGNNCC	1 cut(s)	674
BspMI	ACCTGC	2 cut(s)	479, 1529
BspOI	GCTAGC	1 cut(s)	999
BspPI	GGATC	2 cut(s)	266, 547
BspT104I	TTCGAA	1 cut(s)	1103
BspTI	CTTAAG	1 cut(s)	1454
BsrDI	GCAATG	2 cut(s)	1037, 1301
BsrGI	TGTACA	2 cut(s)	320, 1080
BsrI	ACTGG	3 cut(s)	319, 1271, 1523
BssECI	CCNNGG	1 cut(s)	1621
BssMI	GATC	3 cut(s)	271, 473, 539
BssT1I	CCWWGG	1 cut(s)	1621
Bst4CI	ACNGT	3 cut(s)	155, 1212, 1297
Bst6I	CTCTTC	1 cut(s)	867
BstAFI	CTTAAG	1 cut(s)	1454
BstAUI	TGTACA	2 cut(s)	320, 1080
BstBI	TTCGAA	1 cut(s)	1103
BstC8I	GCNNGC	3 cut(s)	402, 939, 997
BstDEI	CTNAG	1 cut(s)	806
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	274, 476, 542
BstMAI	GTCTC	3 cut(s)	815, 869, 1352
BstMBI	GATC	3 cut(s)	271, 473, 539
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 1001, 1487
BstSFI	CTRYAG	1 cut(s)	1120
BstV1I	GCAGC	1 cut(s)	898
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	891
BsuRI	GGCC	2 cut(s)	1068, 1549
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	3 cut(s)	803, 813, 1011
BveI	ACCTGC	2 cut(s)	479, 1529
Cac8I	GCNNGC	3 cut(s)	402, 939, 997
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	1066
CseI	GACGC	1 cut(s)	1247
Csp6I	GTAC	8 cut(s)	321, 498, 1081, 1135, 1268, 1274, 1467, 1526
CviAII	CATG	4 cut(s)	43, 669, 790, 1163
CviQI	GTAC	8 cut(s)	321, 498, 1081, 1135, 1268, 1274, 1467, 1526
DdeI	CTNAG	1 cut(s)	806
DpnI	GATC	3 cut(s)	273, 475, 541
DpnII	GATC	3 cut(s)	271, 473, 539
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	1547
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	1621
Eco57I	CTGAAG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	1621
ErhI	CCWWGG	1 cut(s)	1621
FaeI	CATG	4 cut(s)	46, 672, 793, 1166
FalI	AAGNNNNNCTT	2 cut(s)	1300, 1332
FaqI	GGGAC	2 cut(s)	365, 1048
FatI	CATG	4 cut(s)	42, 668, 789, 1162
FblI	GTMKAC	3 cut(s)	623, 794, 951
Fnu4HI	GCNGC	1 cut(s)	912
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	912
FspBI	CTAG	9 cut(s)	90, 168, 263, 410, 906, 996, 1365, 1482, 1629
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	912
GsuI	CTGGAG	2 cut(s)	659, 1467
HaeIII	GGCC	2 cut(s)	1068, 1549
HapII	CCGG	1 cut(s)	738
HgaI	GACGC	1 cut(s)	1247
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	46, 672, 793, 1166
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	7 cut(s)	65, 79, 370, 620, 808, 1105, 1139
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	2 cut(s)	478, 1309
Hpy166II	GTNNAC	6 cut(s)	624, 783, 795, 952, 1081, 1268
Hpy188I	TCNGA	4 cut(s)	189, 280, 1110, 1131
Hpy188III	TCNNGA	2 cut(s)	676, 695
Hpy8I	GTNNAC	6 cut(s)	624, 783, 795, 952, 1081, 1268
HpyAV	CCTTC	3 cut(s)	245, 285, 1302
HpyCH4III	ACNGT	3 cut(s)	155, 1212, 1297
HpyCH4IV	ACGT	1 cut(s)	598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 1001, 1487
HpyF3I	CTNAG	1 cut(s)	806
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	4 cut(s)	46, 672, 793, 1166
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	271, 473, 539
LmnI	GCTCC	3 cut(s)	437, 678, 1352
Lsp1109I	GCAGC	1 cut(s)	898
LweI	GCATC	2 cut(s)	835, 875
MaeI	CTAG	9 cut(s)	90, 168, 263, 410, 906, 996, 1365, 1482, 1629
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	2 cut(s)	601, 1297
MalI	GATC	3 cut(s)	273, 475, 541
MboI	GATC	3 cut(s)	271, 473, 539
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	770
MlsI	TGGCCA	1 cut(s)	1549
MluNI	TGGCCA	1 cut(s)	1549
MlyI	GAGTC	3 cut(s)	364, 629, 817
MmeI	TCCRAC	2 cut(s)	532, 1003
Mox20I	TGGCCA	1 cut(s)	1549
MroXI	GAANNNNTTC	2 cut(s)	64, 445
MscI	TGGCCA	1 cut(s)	1549
MslI	CAYNNNNRTG	2 cut(s)	153, 831
Msp20I	TGGCCA	1 cut(s)	1549
MspCI	CTTAAG	1 cut(s)	1454
MspI	CCGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	3 cut(s)	406, 1001, 1487
NdeII	GATC	3 cut(s)	271, 473, 539
NheI	GCTAGC	1 cut(s)	995
NlaIII	CATG	4 cut(s)	46, 672, 793, 1166
NlaIV	GGNNCC	1 cut(s)	674
NmuCI	GTSAC	2 cut(s)	601, 1297
NspV	TTCGAA	1 cut(s)	1103
OliI	CACNNNNGTG	1 cut(s)	153
PacI	TTAATTAA	1 cut(s)	1416
PaqCI	CACCTGC	1 cut(s)	1529
PdmI	GAANNNNTTC	2 cut(s)	64, 445
PfeI	GAWTC	4 cut(s)	65, 79, 1105, 1139
PkrI	GCNGC	1 cut(s)	913
PleI	GAGTC	3 cut(s)	364, 628, 816
PpsI	GAGTC	3 cut(s)	364, 628, 816
PshBI	ATTAAT	2 cut(s)	11, 1412
PsiI	TTATAA	1 cut(s)	969
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	1 cut(s)	1066
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	8 cut(s)	322, 499, 1082, 1136, 1269, 1275, 1468, 1527
RsaNI	GTAC	8 cut(s)	321, 498, 1081, 1135, 1268, 1274, 1467, 1526
RseI	CAYNNNNRTG	2 cut(s)	153, 831
SatI	GCNGC	1 cut(s)	912
Sau3AI	GATC	3 cut(s)	271, 473, 539
Sau96I	GGNCC	1 cut(s)	1066
ScaI	AGTACT	1 cut(s)	1527
SchI	GAGTC	3 cut(s)	364, 629, 817
SduI	GDGCHC	1 cut(s)	770
SfaNI	GCATC	2 cut(s)	835, 875
SfcI	CTRYAG	1 cut(s)	1120
SfuI	TTCGAA	1 cut(s)	1103
SmiMI	CAYNNNNRTG	2 cut(s)	153, 831
SmlI	CTYRAG	1 cut(s)	1454
SmoI	CTYRAG	1 cut(s)	1454
SpeI	ACTAGT	2 cut(s)	89, 1364
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	2 cut(s)	744, 1192
SspMI	CTAG	9 cut(s)	90, 168, 263, 410, 906, 996, 1365, 1482, 1629
StyI	CCWWGG	1 cut(s)	1621
TaaI	ACNGT	3 cut(s)	155, 1212, 1297
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	5 cut(s)	334, 439, 883, 958, 1103
TatI	WGTACW	5 cut(s)	320, 1080, 1273, 1466, 1525
TfiI	GAWTC	4 cut(s)	65, 79, 1105, 1139
TscAI	CASTG	3 cut(s)	810, 820, 1011
TseFI	GTSAC	2 cut(s)	601, 1297
TseI	GCWGC	1 cut(s)	911
Tsp45I	GTSAC	2 cut(s)	601, 1297
TspDTI	ATGAA	7 cut(s)	494, 504, 627, 648, 1442, 1497, 1596
TspRI	CASTG	3 cut(s)	810, 820, 1011
Vha464I	CTTAAG	1 cut(s)	1454
VspI	ATTAAT	2 cut(s)	11, 1412
XapI	RAATTY	5 cut(s)	330, 614, 818, 963, 1432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1542
XmiI	GTMKAC	3 cut(s)	623, 794, 951
XmnI	GAANNNNTTC	2 cut(s)	64, 445
XspI	CTAG	9 cut(s)	90, 168, 263, 410, 906, 996, 1365, 1482, 1629
ZrmI	AGTACT	1 cut(s)	1527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.