FvH4_6g16871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004523
Physical Location & Seq
Reverse (-)
10758669 .. 10760765
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16871.t1

Sequence Viewer

Length: 471 bp
ATGGACAATGTGAATACAAATAGGGTTATGAAGCCAATAGAATCAGAACATGTAGAGCGACTAGAGCCACAAATTGAAGGAGCGGAAAACAGAGAAGATGAGGTTTATATCAGGGATGAAAACCCAAGATTCAATTTTAGAGATTTTGGAGGGAAAACGGTTCTTGTGAGAATTAGAAGGATAGTGCTTCGATTTCACCACTTGACCCCTCAGAGGAAGAGGACGCCTCCTCTTGTTGAGGATGCCACGCTCACTCTTCTGCCTGTCTATTTTATAGCAGGGGATGGAGAAGGTGTAGGAGGTGCTACTGCCGTCGGGAGCTGCTGCCGTCGTCACGATTCACGAATGCTATCGCCGTTGCCGAAGCCGCCGAACAAACTTCGGTCTCCACCTCCTACACCCTCCCCAACACAAAACTTGTTGCTTGAGATAATTAAACTAGGAGAAGACATCCTTGGCATGTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

6.92

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 83
AciI CCGC 2 cut(s) 83, 368
AcyI GRCGYC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 213
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 77, 133
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 1 cut(s) 321
AluI AGCT 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 321, 324
AsuHPI GGTGA 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 308, 311
BccI CCATC 1 cut(s) 278
BceAI ACGGC 3 cut(s) 296, 312, 340
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 62, 440
BisI GCNGC 3 cut(s) 322, 325, 368
BlsI GCNGC 3 cut(s) 323, 326, 369
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 453
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpuEI CTTGAG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 454
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 4 cut(s) 121, 247, 289, 450
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 308, 311
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 390
BspACI CCGC 2 cut(s) 83, 368
BspCNI CTCAG 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 454
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 212, 261
BstACI GRCGYC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 121, 247, 289, 450
BstMAI GTCTC 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 64, 367
BstNSI RCATGY 2 cut(s) 53, 463
BstV1I GCAGC 2 cut(s) 308, 311
BstV2I GAAGAC 1 cut(s) 453
BtsCI GGATG 4 cut(s) 121, 247, 289, 450
CseI GACGC 1 cut(s) 232
CviAII CATG 2 cut(s) 50, 460
CviJI RGCY 4 cut(s) 34, 67, 321, 367
CviKI_1 RGCY 4 cut(s) 34, 67, 321, 367
DdeI CTNAG 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 212, 261
EarI CTCTTC 2 cut(s) 212, 261
Eco130I CCWWGG 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 53, 463
FaiI YATR 5 cut(s) 29, 51, 108, 275, 461
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 2 cut(s) 49, 459
Fnu4HI GCNGC 3 cut(s) 322, 325, 368
FokI GGATG 4 cut(s) 128, 254, 296, 437
Fsp4HI GCNGC 3 cut(s) 322, 325, 368
FspBI CTAG 2 cut(s) 62, 440
GluI GCNGC 3 cut(s) 322, 325, 368
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 2 cut(s) 53, 463
HinfI GANTC 3 cut(s) 41, 129, 338
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 46, 213
Hpy188III TCNNGA 3 cut(s) 316, 335, 342
Hpy99I CGWCG 2 cut(s) 317, 333
HpyAV CCTTC 3 cut(s) 71, 171, 284
HpyCH4III ACNGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 367
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 2 cut(s) 53, 463
LmnI GCTCC 2 cut(s) 80, 318
LpnPI CCDG 3 cut(s) 97, 264, 276
Lsp1109I GCAGC 2 cut(s) 308, 311
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 62, 440
MaeIII GTNAC 1 cut(s) 332
MbiI CCGCTC 1 cut(s) 83
MboII GAAGA 4 cut(s) 107, 229, 248, 458
MluCI AATT 4 cut(s) 72, 133, 171, 432
MseI TTAA 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 64, 367
NlaIII CATG 2 cut(s) 53, 463
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 2 cut(s) 53, 463
PciI ACATGT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 41, 129, 338
PkrI GCNGC 3 cut(s) 323, 326, 369
PscI ACATGT 1 cut(s) 49
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 3 cut(s) 322, 325, 368
SetI ASST 5 cut(s) 105, 295, 304, 323, 394
SfaNI GCATC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 4 cut(s) 72, 133, 171, 432
SsiI CCGC 2 cut(s) 83, 368
SspMI CTAG 2 cut(s) 62, 440
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 190
TaqII GACCGA 1 cut(s) 372
TasI AATT 4 cut(s) 72, 133, 171, 432
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 41, 129, 338
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 321, 324
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 44, 132
XceI RCATGY 2 cut(s) 53, 463
XspI CTAG 2 cut(s) 62, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.