Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002147.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

32171 .. 32650

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002147.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggagggtaagaaacccaagactatctttactgatcgatgtcaggcaatggcaaatgccattgagagggtctttcctgagacccgtcattgtttatgcttgtggcacatatcaaagaatgcggtacaaaacttgaattggctgtacagaaactctgattttggtgaactcttcaagaagttgctttttggacgtgtgatagaagatgaatttgagtctacttgggatgaaataatacagaagtttgaccttgcagggaacacatggctccagacactctataatcttcgtgaaaaatggtgtgcattatttagcaaggatacattttctgccgaaatattatctacacaaagaagtgagagcacaaacaatgtgtttaccctcatgtctactaaaacactgagtctcactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaagtgaattggaagagactttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

159

Amino Acids

18.81

Weight (kDa)

5.61

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	218, 389
AciI	CCGC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	209, 413
AfaI	GTAC	2 cut(s)	126, 146
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	136, 175, 456
AjiI	CACGTC	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	74, 410, 464
ApoI	RAATTY	2 cut(s)	209, 413
AsuHPI	GGTGA	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	3 cut(s)	74, 410, 464
BfuI	GTATCC	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	37
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	69, 392
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	3 cut(s)	74, 410, 464
BsmI	GAATGC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	70, 393
BspDI	ATCGAT	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	144
BssMI	GATC	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	176, 462
BstAUI	TGTACA	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	78, 401
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	3 cut(s)	74, 410, 464
BstMBI	GATC	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	313
BsuTUI	ATCGAT	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	398, 408
ClaI	ATCGAT	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	125, 145
CviAII	CATG	2 cut(s)	264, 385
CviJI	RGCY	2 cut(s)	142, 268
CviKI_1	RGCY	2 cut(s)	142, 268
CviQI	GTAC	2 cut(s)	125, 145
DdeI	CTNAG	2 cut(s)	78, 401
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	176, 462
EarI	CTCTTC	2 cut(s)	176, 462
Eco31I	GGTCTC	1 cut(s)	74
FaeI	CATG	2 cut(s)	267, 388
FaiI	YATR	6 cut(s)	97, 110, 265, 282, 386, 429
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	263, 384
FblI	GTMKAC	2 cut(s)	218, 389
FokI	GGATG	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	254
Hin1II	CATG	2 cut(s)	267, 388
HinfI	GANTC	2 cut(s)	215, 403
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	4 cut(s)	167, 219, 378, 390
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	77, 175, 271, 290
Hpy8I	GTNNAC	4 cut(s)	167, 219, 378, 390
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	254, 305, 421
HpyF3I	CTNAG	2 cut(s)	78, 401
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	267, 388
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	29, 90, 240, 284, 422
LweI	GCATC	1 cut(s)	430
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	4 cut(s)	163, 215, 278, 479
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	4 cut(s)	136, 209, 413, 461
MlyI	GAGTC	2 cut(s)	224, 412
MnlI	CCTC	2 cut(s)	60, 392
MslI	CAYNNNNRTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	267, 388
NlaIV	GGNNCC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	223, 411
PpsI	GAGTC	2 cut(s)	223, 411
PspN4I	GGNNCC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	126, 146
RsaNI	GTAC	2 cut(s)	125, 145
RseI	CAYNNNNRTG	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	224, 412
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	2 cut(s)	196, 252
SfaNI	GCATC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	4 cut(s)	136, 209, 413, 461
SsiI	CCGC	1 cut(s)	122
SspI	AATATT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	37
TasI	AATT	4 cut(s)	136, 209, 413, 461
TatI	WGTACW	1 cut(s)	144
TscAI	CASTG	2 cut(s)	405, 415
TspDTI	ATGAA	2 cut(s)	222, 243
TspRI	CASTG	2 cut(s)	405, 415
XapI	RAATTY	2 cut(s)	209, 413
XmiI	GTMKAC	2 cut(s)	218, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.