Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003862.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

141468 .. 141974

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003862.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcaaatgcaattgagaaggtttttcctgagacacgccatcggttatgtttgtggcacatatcaaagaatgcggtacaaaacttgaattgtctttatagaaatcctgatttcagtgagcttttcaagaagtttctttttggacgtgtgacagaagatgaatttgagtctacttggaatgaaataatagagaagtttgatcttgcagggaacacatggctcaagacactttatgaccttcgtgaaaaatgttgtgcattatttagtaaggatacattctctgtaggaatattatctacacaaagaagtgagagcacaaacaatgtgtttaccctcatgtctactaaaacgctgagtcttactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaagtgaattggaagagacttttcggtgcaataacggaatacctactagggctgcaagaagtagtggaattaagaagcaagctggtatggtctacacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

168

Amino Acids

19.51

Weight (kDa)

7.64

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	170, 341, 498
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	161, 365
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	88, 127, 408
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	2 cut(s)	121, 488
AluI	AGCT	2 cut(s)	121, 488
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	26, 416
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	161, 365
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	26, 416
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	146
BmsI	GCATC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	21, 344
BseXI	GCAGC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	317
BsmAI	GTCTC	2 cut(s)	26, 416
BsmI	GAATGC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	22, 345
BssMI	GATC	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	30, 353
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	26, 416
BstMBI	GATC	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	216, 337
CviJI	RGCY	4 cut(s)	121, 220, 458, 488
CviKI_1	RGCY	4 cut(s)	121, 220, 458, 488
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	30, 353
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
FaeI	CATG	2 cut(s)	219, 340
FaiI	YATR	8 cut(s)	49, 62, 99, 217, 234, 338, 381, 494
FatI	CATG	2 cut(s)	215, 336
FblI	GTMKAC	3 cut(s)	170, 341, 498
Fnu4HI	GCNGC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	219, 340
HinfI	GANTC	2 cut(s)	167, 355
Hpy166II	GTNNAC	4 cut(s)	171, 330, 342, 499
Hpy188III	TCNNGA	5 cut(s)	29, 107, 127, 223, 242
Hpy8I	GTNNAC	4 cut(s)	171, 330, 342, 499
HpyAV	CCTTC	2 cut(s)	13, 248
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	11, 206, 257, 373, 435, 461
HpyF3I	CTNAG	2 cut(s)	30, 353
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	219, 340
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	5 cut(s)	42, 120, 192, 374, 474
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	167, 431
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	6 cut(s)	12, 88, 161, 365, 413, 474
MlyI	GAGTC	2 cut(s)	176, 364
MnlI	CCTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	219, 340
NmuCI	GTSAC	1 cut(s)	148
PctI	GAATGC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	2 cut(s)	175, 363
PpsI	GAGTC	2 cut(s)	175, 363
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	176, 364
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	7 cut(s)	24, 123, 148, 240, 451, 490, 506
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	12, 88, 161, 365, 413, 474
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	148
TasI	AATT	6 cut(s)	12, 88, 161, 365, 413, 474
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	174, 195
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	2 cut(s)	161, 365
XmiI	GTMKAC	3 cut(s)	170, 341, 498
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.