Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

71027437 .. 71031625

Gene Structure 4189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G044360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGGAAATCAACCACCAAAGACCATTTATACTGATCAATGTCAAGCAATGGCAAATGGCATTAGAGATGTTTTTCCTGGTACTTGTCACCGTTTATGCTTGTGGCATATATCGTTGAATGCAACAAGACATATAGCAAGCTACTTAGGAATCCCTGACTTTAAGAAGATGTTCAATAAGTGTCTTTATGGTTGTGAGACAGTTGCAGAATTTCAGTCTACATGGGATGAGTTACTTGTGACATTTAATGTTACAGAGAATGAATGGTTGAAGAGATTATATACACTACGGGAAAAATGGTGTGCAGCCTTCACCTTAGACACTTTTTCTGCTAGAATTCAAGCTTCACAAAGAAGTGAGAGCACAAATAATGTGTTCCATCATATATCTGCTGCAAGAATGAGGCTTATTGAATTTGTGCATCACTATGATAAGCAAGTAGAAGCCACACGCTCAAGTGAATTAGAAGAGACTTTTCGTTGCACAAATGGCCTTACCGCTAGCATGGCATTCAAGATGGATGAAGTTGATACTAATGGAACTATACATACTTTTGAATTGAGTCAGGAGGGTCGCAGTAGAATTTATGTTGTGAAGCTGAACTCTTCAGATGACACAATCACATGTAGCTGCAAGATGTTTGAATCTATGGGATTGTTGTGTCGTCATGCTCTAAGGGTATTGAATGTCAGGAATGTTACTAAGATCCCACCCCAATATATATTGAAGCGTTGGAAAAAGGATGCAAAATCTGGAATTGGGGCACAAGAACATGAAGCATTATTACAACAAAAGGATAAACCATCAGTTGTATTGCGTCGAAATAATATGGTTCGAAAAGCTTATGATATATTGAGCAAAGCTGCAATGACAGAGAAGGGTAGTAAAATTGCAATGCAAAAATTGAAAGAGATGGAAGAATTAATTGAAAAGGATGAGCTAGAGTCAAAAGGATTTGATCACAAAGAAAGCAATGAGGCTTTGAATGATGATGTTATTTCTGATGATAATGAAAGTGGCTGCCCAGTTAATGAGACACCATTATTGGATCCCCCATGTGCAAGGCCAAAAGGGATGAGTAATGATAGATGGAAAGCATCTGTGGAGAAGCGAAACAAGAATACATCTAAGAATACCGTGTCATCTAAAGATCCAGTCTCATCTAGTAAGAAGGTTTGCACGAGATTGTCAAACACTAATGTGCATCCATGTTTGCCTCCATCTAATCAGCTTTATCCATCTATGAGCTTGTCGACAATCAATACTCAGGGATGTTTGCCTCCACCTAATCAGCTTACCACACAGCAATACGGAAGAACCACCAACTTATATTGTCTAAAACATCCTTGTGGTTTGGGCTTATACTGTTACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

458

Amino Acids

51.99

Weight (kDa)

8.61

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	2 - 38	1.1e-08	MULE transposase domain
SWIM	PF04434	198 - 231	1.2e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	218, 1253
AciI	CCGC	1 cut(s)	498
AclWI	GGATC	4 cut(s)	700, 1043, 1056, 1145
AcsI	RAATTY	4 cut(s)	209, 336, 413, 582
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	623
AjnI	CCWGG	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	1199
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	4 cut(s)	191, 464, 1028, 1162
AlwI	GGATC	4 cut(s)	700, 1043, 1056, 1145
AoxI	GGCC	2 cut(s)	490, 1064
ApeKI	GCWGC	5 cut(s)	305, 392, 630, 863, 1020
ApoI	RAATTY	4 cut(s)	209, 336, 413, 582
AseI	ATTAAT	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	80, 304
AsuII	TTCGAA	1 cut(s)	835
AsuNHI	GCTAGC	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	766
BamHI	GGATCC	1 cut(s)	1048
BarI	GAAGNNNNNNTAC	2 cut(s)	768, 800
BauI	CACGAG	1 cut(s)	1180
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	317, 379, 617, 850, 1007
BccI	CCATC	7 cut(s)	387, 511, 811, 907, 1083, 1228, 1246
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	2 cut(s)	34, 958
BcoDI	GTCTC	4 cut(s)	191, 464, 1028, 1162
BfaI	CTAG	4 cut(s)	333, 501, 941, 1164
BisI	GCNGC	5 cut(s)	306, 393, 631, 864, 1021
BlsI	GCNGC	5 cut(s)	307, 394, 632, 865, 1022
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	1050
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	1019
BmsI	GCATC	4 cut(s)	430, 733, 1106, 1213
BmtI	GCTAGC	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	1019
Bpu14I	TTCGAA	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	1025, 1154
Bse3DI	GCAATG	4 cut(s)	54, 873, 900, 979
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	8 cut(s)	232, 526, 748, 940, 1080, 1204, 1277, 1342
BseMI	GCAATG	4 cut(s)	54, 873, 900, 979
BseMII	CTCAG	1 cut(s)	1280
BseNI	ACTGG	2 cut(s)	1025, 1154
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	5 cut(s)	317, 379, 617, 850, 1007
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	492, 1066
BsiHKAI	GWGCWC	1 cut(s)	365
BsmAI	GTCTC	4 cut(s)	191, 464, 1028, 1162
BsmI	GAATGC	2 cut(s)	124, 509
BsnI	GGCC	2 cut(s)	492, 1066
Bsp119I	TTCGAA	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	365, 766
Bsp143I	GATC	5 cut(s)	34, 705, 958, 1048, 1150
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	2 cut(s)	492, 1066
BspCNI	CTCAG	1 cut(s)	1279
BspLI	GGNNCC	1 cut(s)	1050
BspOI	GCTAGC	1 cut(s)	504
BspPI	GGATC	4 cut(s)	700, 1043, 1056, 1145
BspT104I	TTCGAA	1 cut(s)	835
BsrDI	GCAATG	4 cut(s)	54, 873, 900, 979
BsrI	ACTGG	2 cut(s)	1025, 1154
BssMI	GATC	5 cut(s)	34, 705, 958, 1048, 1150
BssSI	CACGAG	1 cut(s)	1180
Bst2BI	CACGAG	1 cut(s)	1180
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	92, 202, 1138, 1367
Bst6I	CTCTTC	3 cut(s)	266, 462, 610
BstBI	TTCGAA	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	139, 502
BstDEI	CTNAG	6 cut(s)	145, 316, 674, 702, 1128, 1266
BstF5I	GGATG	8 cut(s)	232, 526, 748, 940, 1080, 1204, 1277, 1342
BstKTI	GATC	5 cut(s)	37, 708, 961, 1051, 1153
BstMAI	GTCTC	4 cut(s)	191, 464, 1028, 1162
BstMBI	GATC	5 cut(s)	34, 705, 958, 1048, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 506
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	5 cut(s)	317, 379, 617, 850, 1007
BstX2I	RGATCY	3 cut(s)	705, 1048, 1150
BstYI	RGATCY	3 cut(s)	705, 1048, 1150
BsuRI	GGCC	2 cut(s)	492, 1066
BtsCI	GGATG	8 cut(s)	232, 526, 748, 940, 1080, 1204, 1277, 1342
Cac8I	GCNNGC	2 cut(s)	139, 502
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	7 cut(s)	222, 505, 624, 668, 773, 1056, 1209
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	6 cut(s)	145, 316, 674, 702, 1128, 1266
DpnI	GATC	5 cut(s)	36, 707, 960, 1050, 1152
DpnII	GATC	5 cut(s)	34, 705, 958, 1048, 1150
Eam1104I	CTCTTC	3 cut(s)	266, 462, 610
EarI	CTCTTC	3 cut(s)	266, 462, 610
Eco57I	CTGAAG	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	7 cut(s)	225, 508, 627, 671, 776, 1059, 1212
FatI	CATG	7 cut(s)	221, 504, 623, 667, 772, 1055, 1208
FbaI	TGATCA	2 cut(s)	34, 958
FblI	GTMKAC	2 cut(s)	218, 1253
Fnu4HI	GCNGC	5 cut(s)	306, 393, 631, 864, 1021
FokI	GGATG	8 cut(s)	239, 533, 755, 947, 1087, 1191, 1284, 1329
Fsp4HI	GCNGC	5 cut(s)	306, 393, 631, 864, 1021
FspBI	CTAG	4 cut(s)	333, 501, 941, 1164
GluI	GCNGC	5 cut(s)	306, 393, 631, 864, 1021
HaeIII	GGCC	2 cut(s)	492, 1066
HgaI	GACGC	1 cut(s)	806
Hin1II	CATG	7 cut(s)	225, 508, 627, 671, 776, 1059, 1212
HincII	GTYRAC	1 cut(s)	1254
HindII	GTYRAC	1 cut(s)	1254
HindIII	AAGCTT	2 cut(s)	342, 840
HinfI	GANTC	4 cut(s)	150, 562, 644, 944
HphI	GGTGA	2 cut(s)	80, 304
Hpy166II	GTNNAC	2 cut(s)	219, 1254
Hpy188I	TCNGA	2 cut(s)	610, 1003
Hpy188III	TCNNGA	4 cut(s)	514, 566, 691, 753
Hpy8I	GTNNAC	2 cut(s)	219, 1254
Hpy99I	CGWCG	1 cut(s)	822
HpyAV	CCTTC	3 cut(s)	319, 871, 1165
HpyCH4III	ACNGT	4 cut(s)	92, 202, 1138, 1367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 506
HpyF3I	CTNAG	6 cut(s)	145, 316, 674, 702, 1128, 1266
Hsp92II	CATG	7 cut(s)	225, 508, 627, 671, 776, 1059, 1212
Ksp22I	TGATCA	2 cut(s)	34, 958
Kzo9I	GATC	5 cut(s)	34, 705, 958, 1048, 1150
LpnPI	CCDG	9 cut(s)	63, 90, 168, 551, 676, 738, 1038, 1167, 1253
Lsp1109I	GCAGC	5 cut(s)	317, 379, 617, 850, 1007
LweI	GCATC	4 cut(s)	430, 733, 1106, 1213
MaeI	CTAG	4 cut(s)	333, 501, 941, 1164
MaeIII	GTNAC	6 cut(s)	86, 231, 238, 250, 697, 1367
MalI	GATC	5 cut(s)	36, 707, 960, 1050, 1152
MboI	GATC	5 cut(s)	34, 705, 958, 1048, 1150
MboII	GAAGA	6 cut(s)	178, 283, 479, 597, 929, 1326
MflI	RGATCY	3 cut(s)	705, 1048, 1150
MhlI	GDGCHC	2 cut(s)	365, 766
MlyI	GAGTC	2 cut(s)	571, 953
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	5 cut(s)	396, 562, 970, 1227, 1290
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	5 cut(s)	162, 246, 923, 1029, 1375
MslI	CAYNNNNRTG	3 cut(s)	426, 1199, 1347
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	124, 509
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	489, 506
NdeII	GATC	5 cut(s)	34, 705, 958, 1048, 1150
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	7 cut(s)	225, 508, 627, 671, 776, 1059, 1212
NlaIV	GGNNCC	1 cut(s)	1050
NmuCI	GTSAC	2 cut(s)	86, 238
NspI	RCATGY	1 cut(s)	627
NspV	TTCGAA	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	1199
PciI	ACATGT	1 cut(s)	623
PctI	GAATGC	2 cut(s)	124, 509
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	150, 644
PkrI	GCNGC	5 cut(s)	307, 394, 632, 865, 1022
PleI	GAGTC	2 cut(s)	570, 952
PpsI	GAGTC	2 cut(s)	570, 952
PscI	ACATGT	1 cut(s)	623
PshBI	ATTAAT	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	1050
PsrI	GAACNNNNNNTAC	2 cut(s)	532, 564
PsuI	RGATCY	3 cut(s)	705, 1048, 1150
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	3 cut(s)	426, 1199, 1347
SalI	GTCGAC	1 cut(s)	1252
SaqAI	TTAA	5 cut(s)	162, 246, 923, 1029, 1375
SatI	GCNGC	5 cut(s)	306, 393, 631, 864, 1021
Sau3AI	GATC	5 cut(s)	34, 705, 958, 1048, 1150
SchI	GAGTC	2 cut(s)	571, 953
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	365, 766
SfaNI	GCATC	4 cut(s)	430, 733, 1106, 1213
SfuI	TTCGAA	1 cut(s)	835
SmiMI	CAYNNNNRTG	3 cut(s)	426, 1199, 1347
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	4 cut(s)	333, 501, 941, 1164
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	92, 202, 1138, 1367
TaqI	TCGA	3 cut(s)	820, 835, 1253
TfiI	GAWTC	2 cut(s)	150, 644
Tru1I	TTAA	5 cut(s)	162, 246, 923, 1029, 1375
Tru9I	TTAA	5 cut(s)	162, 246, 923, 1029, 1375
TseFI	GTSAC	2 cut(s)	86, 238
TseI	GCWGC	5 cut(s)	305, 392, 630, 863, 1020
Tsp45I	GTSAC	2 cut(s)	86, 238
TspDTI	ATGAA	4 cut(s)	276, 537, 789, 1026
TspGWI	ACGGA	1 cut(s)	1326
VspI	ATTAAT	1 cut(s)	923
XapI	RAATTY	4 cut(s)	209, 336, 413, 582
XceI	RCATGY	1 cut(s)	627
XmiI	GTMKAC	2 cut(s)	218, 1253
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	4 cut(s)	333, 501, 941, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.