Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

10908494 .. 10909699

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15010.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCGTGAAGTTGAAAGTGATGGAACCCTCCAAACCTTTGAACTTAATGAGGAGGGTCACAGAACAGTTTATGTTGTCAAATTCAACTCTTCAACTTTCAACATCTCATGTAGTTGCAAGAGGTTTGAATCCATGGGTTTGTTATGTCGTCATGCTCTACCGGTAATGAATGTAAAAGAAGTTTCTCAAATACCAAATCAATACATATTGAAATGGTGGACGAAAAACGCAAAGAAAGAATGGAATGAAAATGAGCATGGAGAATCTTTACATGTAAGTGACAATTCGTCAATGACGTTGCATCGGAATACTTTGATGCGGATTGCTTATGGTATATTGAGTATGGGAGCTGAGACAAAAAGTTGTCATAGAATTGCAGTGAAAAAATTGAAAGAAATGGCACAATTGCTTGACAAAGAAATGAAGTCAAATGGGGAAGAAATTGCTAATAAAGAAAGCAATGACGTTTTGAATGATGCTACTGTTTGTGATATTGATGGAGTCAATAACTCATCTGATGAGGCACCGGTGTTGAATCTTCCGAGTGTGAGGCCAAAGGGAATAAGTACTGGCTCATCTAAGAAAACCAAACCACCAAGCAGTGGTGGTCCTTCACATACCGCCAATGCCAATGCTCGTTTCCCTTCAACTAATCAGTTCTATCCAACTATGACAATGCCAACTGCCAATTCCCATGTTTGTTTCCCTTCACCTAATCAGCTCTATCCAACACTGAGTTTGCTAACCACCAATGCACATGCTCGTTTCCCTTCATCTAATAAGTTCTATCCAACCACGAGATTGTCAACCACCAATGTCAAGACTGCCTTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

279

Amino Acids

30.94

Weight (kDa)

8.82

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	602
AciI	CCGC	2 cut(s)	319, 621
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	271
AgeI	ACCGGT	2 cut(s)	160, 526
AhdI	GACNNNNNGTC	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	4 cut(s)	623, 655, 673, 705
AluBI	AGCT	2 cut(s)	350, 721
AluI	AGCT	2 cut(s)	350, 721
Alw26I	GTCTC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	80
AsiGI	ACCGGT	2 cut(s)	160, 526
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	523
BauI	CACGAG	1 cut(s)	796
BccI	CCATC	2 cut(s)	14, 491
BcoDI	GTCTC	1 cut(s)	347
BmcAI	AGTACT	1 cut(s)	568
Bme18I	GGWCC	1 cut(s)	608
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	25, 525
BmsI	GCATC	3 cut(s)	306, 310, 466
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	2 cut(s)	160, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	2 cut(s)	160, 526
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	342, 725
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	523
BshTI	ACCGGT	2 cut(s)	160, 526
BsiSI	CCGG	2 cut(s)	161, 527
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	553
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	2 cut(s)	319, 621
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	2 cut(s)	343, 726
BspLI	GGNNCC	2 cut(s)	25, 525
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	160, 526
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	2 cut(s)	160, 526
BssECI	CCNNGG	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	796
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	796
Bst4CI	ACNGT	2 cut(s)	67, 484
Bst6I	CTCTTC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	351, 579, 734
BstDSI	CCRYGG	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	347
BstNSI	RCATGY	2 cut(s)	275, 761
BsuRI	GGCC	1 cut(s)	553
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	2 cut(s)	384, 607
BtsIMutI	CAGTG	3 cut(s)	384, 607, 731
Cfr10I	RCCGGY	2 cut(s)	160, 526
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	567
CspAI	ACCGGT	2 cut(s)	160, 526
CviAII	CATG	7 cut(s)	108, 133, 152, 257, 272, 695, 758
CviJI	RGCY	4 cut(s)	350, 553, 573, 721
CviKI_1	RGCY	4 cut(s)	350, 553, 573, 721
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	351, 579, 734
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	7 cut(s)	111, 136, 155, 260, 275, 698, 761
FalI	AAGNNNNNCTT	1 cut(s)	812
FatI	CATG	7 cut(s)	107, 132, 151, 256, 271, 694, 757
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	161, 527
Hin1II	CATG	7 cut(s)	111, 136, 155, 260, 275, 698, 761
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HinfI	GANTC	4 cut(s)	128, 263, 501, 535
HpaII	CCGG	2 cut(s)	161, 527
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	2 cut(s)	219, 807
Hpy188I	TCNGA	3 cut(s)	306, 517, 543
Hpy188III	TCNNGA	1 cut(s)	820
Hpy8I	GTNNAC	2 cut(s)	219, 807
HpyAV	CCTTC	4 cut(s)	621, 654, 717, 780
HpyCH4III	ACNGT	2 cut(s)	67, 484
HpyCH4IV	ACGT	2 cut(s)	296, 465
HpyCH4V	TGCA	4 cut(s)	117, 301, 377, 755
HpyF3I	CTNAG	3 cut(s)	351, 579, 734
HpySE526I	ACGT	2 cut(s)	296, 465
Hsp92II	CATG	7 cut(s)	111, 136, 155, 260, 275, 698, 761
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	3 cut(s)	174, 540, 555
LweI	GCATC	3 cut(s)	306, 310, 466
MaeII	ACGT	2 cut(s)	296, 465
MaeIII	GTNAC	2 cut(s)	56, 278
MboII	GAAGA	3 cut(s)	81, 449, 530
MfeI	CAATTG	1 cut(s)	404
MluCI	AATT	7 cut(s)	80, 283, 372, 386, 404, 441, 688
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	3 cut(s)	689, 752, 815
MnlI	CCTC	6 cut(s)	38, 43, 46, 114, 514, 543
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	2 cut(s)	161, 527
MunI	CAATTG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	132
NlaIII	CATG	7 cut(s)	111, 136, 155, 260, 275, 698, 761
NlaIV	GGNNCC	2 cut(s)	25, 525
NmuCI	GTSAC	2 cut(s)	56, 278
NspI	RCATGY	2 cut(s)	275, 761
PciI	ACATGT	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	128, 263, 535
PflMI	CCANNNNNTGG	1 cut(s)	602
PinAI	ACCGGT	2 cut(s)	160, 526
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PscI	ACATGT	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	25, 525
PspPI	GGNCC	1 cut(s)	608
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	608
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	1 cut(s)	510
SetI	ASST	7 cut(s)	38, 125, 299, 352, 468, 715, 723
SfaNI	GCATC	3 cut(s)	306, 310, 466
SgrAI	CRCCGGYG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	7 cut(s)	80, 283, 372, 386, 404, 441, 688
SsiI	CCGC	2 cut(s)	319, 621
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	67, 484
TaiI	ACGT	2 cut(s)	299, 468
TasI	AATT	7 cut(s)	80, 283, 372, 386, 404, 441, 688
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	3 cut(s)	128, 263, 535
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	3 cut(s)	384, 607, 738
TseFI	GTSAC	2 cut(s)	56, 278
Tsp45I	GTSAC	2 cut(s)	56, 278
TspDTI	ATGAA	4 cut(s)	182, 261, 437, 762
TspRI	CASTG	3 cut(s)	384, 607, 738
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	2 cut(s)	275, 761
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.