Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002902.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

211149 .. 212390

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002902.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atggaaggtaaaaaaccgaagactatttttactgatcgatgtcaggcaatggcaaatgctattgagaaggtttttcctgagacacgccatcggttatgtttgtggcacatatcaaagaatgcggtacaaaacttgaattggctttatagaaatcctgatttcagtgagcttttcaagaagtttctttttggacgtgtgacagaagatgaatttgaatctacttggaatgaaataatagagaagtttgatcttgtagggaacacatggctcaagacactttatgaccttcgtgaaaaatggtgtgcattatttagtaaggatacattctctgcaggaatattatctacacaaagaagtgagagcacaaacaatgtgtttaccctcatgtctacactgagtcttactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaattgaattggaagagacttttcggtgcaataacgggatacctactagggctgcaagaagtagtggaattaagaagcaagctggtatgatctacacccgaaaaatttatagtttatttgagtttgagtttgtcgctagcttggcagtgaagatggaggaagttggaagtgatggaacattgcagacatttgaacttaatgaggagggtcataaaagagtgtacattgttcgattcaattcttcaaatctgaccatctcttgtagttgtcagatgtatgaatctatgggctggttatgccgtcatgctttgagggtgttaaatgtgaaaaatattactcaaataccaacacagtatatactaaagagatggacaaaagatgcaaagaaaggagtagaggaaaatagtgtatcactacaggtcaaggagaaatcaactgtgacattgagtaggaatactttaatgcgaaaagcttatggtataattagtaagggagcggagacaactagtggtagtgatatcgcgatgcagaaattgatagaagcagaagagctaattgagaagaatatgaagaagttatctattatgggagatgtcaatgaaaaaatcaatgaggttcctggtgttaatatttctggtggcaatgctaataaaaatgaaaccttatttgacgaaacaccaatactcaatccagcaggtgtgtggccaaaaggcatgagtaataaaagaaggaaagatgaaatggagaagaaacaaaataaaaaggcaccaaaaggccaaggttccagtaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

413

Amino Acids

47.31

Weight (kDa)

9.13

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1133
Acc36I	ACCTGC	1 cut(s)	1133
AccB1I	GGYRCC	1 cut(s)	1213
AccBSI	CCGCTC	1 cut(s)	944
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	971
AciI	CCGC	2 cut(s)	122, 944
AcoI	YGGCCR	1 cut(s)	1151
AcsI	RAATTY	3 cut(s)	209, 407, 552
AfaI	GTAC	2 cut(s)	126, 671
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	8 cut(s)	136, 175, 215, 450, 455, 641, 685, 693
AhlI	ACTAGT	1 cut(s)	953
AjiI	CACGTC	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	1066
AluBI	AGCT	5 cut(s)	169, 530, 588, 920, 1000
AluI	AGCT	5 cut(s)	169, 530, 588, 920, 1000
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	74, 458, 941
AoxI	GGCC	2 cut(s)	1151, 1222
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	3 cut(s)	209, 407, 552
AsuNHI	GCTAGC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	1153
BanI	GGYRCC	1 cut(s)	1213
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	5 cut(s)	96, 595, 614, 710, 810
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	1 cut(s)	1068
BciVI	GTATCC	2 cut(s)	313, 480
BcoDI	GTCTC	3 cut(s)	74, 458, 941
BcuI	ACTAGT	1 cut(s)	953
BfaI	CTAG	3 cut(s)	495, 585, 954
BfmI	CTRYAG	2 cut(s)	330, 863
BfuAI	ACCTGC	1 cut(s)	1133
BfuI	GTATCC	2 cut(s)	313, 480
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	1068
BmgBI	CACGTC	1 cut(s)	194
BmiI	GGNNCC	3 cut(s)	1065, 1215, 1231
BmrFI	CCNGG	1 cut(s)	1068
BmsI	GCATC	3 cut(s)	424, 817, 963
BmtI	GCTAGC	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	1225
Bse1I	ACTGG	1 cut(s)	1233
Bse3DI	GCAATG	3 cut(s)	54, 626, 1096
BseBI	CCWGG	1 cut(s)	1068
BseCI	ATCGAT	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	1225
BseMI	GCAATG	3 cut(s)	54, 626, 1096
BseMII	CTCAG	2 cut(s)	69, 386
BseNI	ACTGG	1 cut(s)	1233
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	971
BshFI	GGCC	2 cut(s)	1153, 1224
BshNI	GGYRCC	1 cut(s)	1213
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	365
BsmAI	GTCTC	3 cut(s)	74, 458, 941
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	1153, 1224
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	34, 247, 537
Bsp68I	TCGCGA	1 cut(s)	971
BspACI	CCGC	2 cut(s)	122, 944
BspANI	GGCC	2 cut(s)	1153, 1224
BspCNI	CTCAG	2 cut(s)	70, 387
BspDI	ATCGAT	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	971
BspLI	GGNNCC	3 cut(s)	1065, 1215, 1231
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	1133
BspOI	GCTAGC	1 cut(s)	588
BspQI	GCTCTTC	1 cut(s)	990
BspT107I	GGYRCC	1 cut(s)	1213
BsrBI	CCGCTC	1 cut(s)	944
BsrDI	GCAATG	3 cut(s)	54, 626, 1096
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	1233
BssECI	CCNNGG	1 cut(s)	1225
BssMI	GATC	3 cut(s)	34, 247, 537
BssT1I	CCWWGG	1 cut(s)	1225
Bst2UI	CCWGG	1 cut(s)	1068
Bst4CI	ACNGT	2 cut(s)	801, 886
Bst6I	CTCTTC	2 cut(s)	456, 990
BstAUI	TGTACA	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	528, 586
BstDEI	CTNAG	2 cut(s)	78, 395
BstFNI	CGCG	1 cut(s)	971
BstKTI	GATC	3 cut(s)	37, 250, 540
BstMAI	GTCTC	3 cut(s)	74, 458, 941
BstMBI	GATC	3 cut(s)	34, 247, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 744
BstNI	CCWGG	1 cut(s)	1068
BstSCI	CCNGG	1 cut(s)	1066
BstSFI	CTRYAG	2 cut(s)	330, 863
BstUI	CGCG	1 cut(s)	971
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	37
BsuI	GTATCC	2 cut(s)	313, 480
BsuRI	GGCC	2 cut(s)	1153, 1224
BsuTUI	ATCGAT	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	986
BtrI	CACGTC	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	169, 392, 600
BtuMI	TCGCGA	1 cut(s)	971
BveI	ACCTGC	1 cut(s)	1133
Cac8I	GCNNGC	2 cut(s)	528, 586
ClaI	ATCGAT	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	125, 670
CviAII	CATG	4 cut(s)	264, 385, 752, 1162
CviQI	GTAC	2 cut(s)	125, 670
DdeI	CTNAG	2 cut(s)	78, 395
DpnI	GATC	3 cut(s)	36, 249, 539
DpnII	GATC	3 cut(s)	34, 247, 537
EaeI	YGGCCR	1 cut(s)	1151
Eam1104I	CTCTTC	2 cut(s)	456, 990
EarI	CTCTTC	2 cut(s)	456, 990
Eco130I	CCWWGG	1 cut(s)	1225
Eco32I	GATATC	1 cut(s)	967
EcoRII	CCWGG	1 cut(s)	1066
EcoRV	GATATC	1 cut(s)	967
EcoT14I	CCWWGG	1 cut(s)	1225
ErhI	CCWWGG	1 cut(s)	1225
FaeI	CATG	4 cut(s)	267, 388, 755, 1165
FatI	CATG	4 cut(s)	263, 384, 751, 1161
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	3 cut(s)	495, 585, 954
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	1153, 1224
Hin1II	CATG	4 cut(s)	267, 388, 755, 1165
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	4 cut(s)	215, 397, 681, 728
Hpy166II	GTNNAC	3 cut(s)	378, 390, 670
Hpy188I	TCNGA	2 cut(s)	699, 720
Hpy188III	TCNNGA	6 cut(s)	77, 155, 175, 271, 290, 970
Hpy8I	GTNNAC	3 cut(s)	378, 390, 670
HpyAV	CCTTC	3 cut(s)	61, 296, 1170
HpyCH4III	ACNGT	2 cut(s)	801, 886
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	8 cut(s)	305, 332, 415, 477, 503, 631, 830, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 744
HpyF3I	CTNAG	2 cut(s)	78, 395
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	4 cut(s)	267, 388, 755, 1165
Kzo9I	GATC	3 cut(s)	34, 247, 537
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	1 cut(s)	941
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	3 cut(s)	424, 817, 963
MaeI	CTAG	3 cut(s)	495, 585, 954
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	196, 886
MalI	GATC	3 cut(s)	36, 249, 539
MbiI	CCGCTC	1 cut(s)	944
MboI	GATC	3 cut(s)	34, 247, 537
MboII	GAAGA	9 cut(s)	31, 215, 473, 610, 681, 1007, 1021, 1030, 1207
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	1153
MluNI	TGGCCA	1 cut(s)	1153
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	7 cut(s)	392, 598, 643, 646, 753, 838, 1054
Mox20I	TGGCCA	1 cut(s)	1153
MscI	TGGCCA	1 cut(s)	1153
MseI	TTAA	5 cut(s)	519, 645, 767, 908, 1074
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	1153
MspR9I	CCNGG	1 cut(s)	1068
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	1068
MvnI	CGCG	1 cut(s)	971
MwoI	GCNNNNNNNGC	2 cut(s)	590, 744
NdeII	GATC	3 cut(s)	34, 247, 537
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	4 cut(s)	267, 388, 755, 1165
NlaIV	GGNNCC	3 cut(s)	1065, 1215, 1231
NmuCI	GTSAC	2 cut(s)	196, 886
NruI	TCGCGA	1 cut(s)	971
PaqCI	CACCTGC	1 cut(s)	1133
PciSI	GCTCTTC	1 cut(s)	990
PctI	GAATGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	215, 681, 728
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	1066
PspGI	CCWGG	1 cut(s)	1066
PspN4I	GGNNCC	3 cut(s)	1065, 1215, 1231
PstI	CTGCAG	1 cut(s)	334
RruI	TCGCGA	1 cut(s)	971
RsaI	GTAC	2 cut(s)	126, 671
RsaNI	GTAC	2 cut(s)	125, 670
RseI	CAYNNNNRTG	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	5 cut(s)	519, 645, 767, 908, 1074
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	3 cut(s)	34, 247, 537
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	1068
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	3 cut(s)	424, 817, 963
SfcI	CTRYAG	2 cut(s)	330, 863
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	953
SsiI	CCGC	2 cut(s)	122, 944
SspI	AATATT	3 cut(s)	339, 781, 1078
SspMI	CTAG	3 cut(s)	495, 585, 954
StyD4I	CCNGG	1 cut(s)	1066
StyI	CCWWGG	1 cut(s)	1225
TaaI	ACNGT	2 cut(s)	801, 886
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	37, 679
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	215, 681, 728
Tru1I	TTAA	5 cut(s)	519, 645, 767, 908, 1074
Tru9I	TTAA	5 cut(s)	519, 645, 767, 908, 1074
TscAI	CASTG	3 cut(s)	169, 399, 600
TseFI	GTSAC	2 cut(s)	196, 886
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	196, 886
TspDTI	ATGAA	7 cut(s)	222, 243, 741, 1031, 1062, 1119, 1200
TspRI	CASTG	3 cut(s)	169, 399, 600
XapI	RAATTY	3 cut(s)	209, 407, 552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1146
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	3 cut(s)	495, 585, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.