Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001531.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

71868 .. 72692

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001531.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggagggtaagaaacccaagactatctttactgatcgatgtcaggcaatggcaaatgccattgaaaaggactttcctgagacacgccaccggttatgtttgtggcacatatcaaagaatgcagtacaaaacttgaattggctgtatagaaactctgattttgggaacacatggctccagacactctatgatcttcgtgaaaaatggtgtgcattatttagcaaggatacattttctgccagaatattatctacacaaagaagtgagagcacaaacaatgtgtttatcctcatgtatactaaaacactgagtctcactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaagtgaattggaagaaacttttcgatgcaataacgaaatacctactagggctgcaaaaattagtggaattaagaagcaagctggtatggtctacacttttaaaatttatagtttatttgagtttgagtttatcgctagcttggcagtgaagatggaggaagttggaagtgatgggacattgcagacatttgagcttaatgaggagggccataaaagagtgtacattgtccaattcaacccttcgaatctgaccatctccagtagttgtcagttgtacgaatctattggctggttatgtcgtcattctttgagggttttaaatgtgaaaaatattactcaaataccaacacagtatatactaaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

243

Amino Acids

28.44

Weight (kDa)

8.82

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	296, 453
AcsI	RAATTY	2 cut(s)	320, 465
AfaI	GTAC	3 cut(s)	126, 584, 638
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	4 cut(s)	65, 136, 363, 598
AluBI	AGCT	3 cut(s)	443, 501, 556
AluI	AGCT	3 cut(s)	443, 501, 556
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	74, 317
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	320, 465
AsiGI	ACCGGT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	568
AsuII	TTCGAA	1 cut(s)	605
AsuNHI	GCTAGC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	508, 527, 623
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	74, 317
BfaI	CTAG	2 cut(s)	408, 498
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	2 cut(s)	337, 377
BmtI	GCTAGC	1 cut(s)	501
BpmI	CTGGAG	2 cut(s)	161, 604
Bpu14I	TTCGAA	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	54, 539
BseCI	ATCGAT	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	54, 539
BseMII	CTCAG	2 cut(s)	69, 299
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	400
BshFI	GGCC	1 cut(s)	570
BshTI	ACCGGT	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	550
BsmAI	GTCTC	2 cut(s)	74, 317
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	570
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	34, 190
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	2 cut(s)	70, 300
BspDI	ATCGAT	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	176
BspOI	GCTAGC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	54, 539
BsrFI	RCCGGY	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	90
BssMI	GATC	2 cut(s)	34, 190
BssNAI	GTATAC	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	714
BstAUI	TGTACA	1 cut(s)	582
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	441, 499
BstDEI	CTNAG	2 cut(s)	78, 308
BstKTI	GATC	2 cut(s)	37, 193
BstMAI	GTCTC	2 cut(s)	74, 317
BstMBI	GATC	2 cut(s)	34, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	400
BstZ17I	GTATAC	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	570
BsuTUI	ATCGAT	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	305, 315, 513
Cac8I	GCNNGC	2 cut(s)	441, 499
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	568
ClaI	ATCGAT	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	125, 583, 637
CspAI	ACCGGT	1 cut(s)	90
CviAII	CATG	2 cut(s)	171, 292
CviJI	RGCY	8 cut(s)	142, 175, 413, 443, 501, 556, 570, 651
CviKI_1	RGCY	8 cut(s)	142, 175, 413, 443, 501, 556, 570, 651
CviQI	GTAC	3 cut(s)	125, 583, 637
DdeI	CTNAG	2 cut(s)	78, 308
DpnI	GATC	2 cut(s)	36, 192
DpnII	GATC	2 cut(s)	34, 190
DraI	TTTAAA	2 cut(s)	463, 681
FaeI	CATG	2 cut(s)	174, 295
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	170, 291
FblI	GTMKAC	2 cut(s)	296, 453
Fnu4HI	GCNGC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	408, 498
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	2 cut(s)	161, 604
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	2 cut(s)	174, 295
HinfI	GANTC	3 cut(s)	310, 607, 641
HpaII	CCGG	1 cut(s)	91
Hpy166II	GTNNAC	3 cut(s)	297, 454, 583
Hpy188I	TCNGA	2 cut(s)	157, 612
Hpy188III	TCNNGA	3 cut(s)	77, 178, 197
Hpy8I	GTNNAC	3 cut(s)	297, 454, 583
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4V	TGCA	6 cut(s)	122, 212, 328, 390, 416, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	78, 308
Hsp92II	CATG	2 cut(s)	174, 295
Kzo9I	GATC	2 cut(s)	34, 190
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	9 cut(s)	29, 90, 104, 191, 253, 329, 429, 634, 637
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	337, 377
MaeI	CTAG	2 cut(s)	408, 498
MalI	GATC	2 cut(s)	36, 192
MboI	GATC	2 cut(s)	34, 190
MboII	GAAGA	3 cut(s)	185, 386, 523
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	7 cut(s)	136, 320, 368, 420, 429, 465, 593
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	5 cut(s)	299, 511, 556, 559, 666
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	4 cut(s)	432, 462, 558, 680
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	2 cut(s)	34, 190
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	2 cut(s)	174, 295
NlaIV	GGNNCC	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	605
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	607, 641
PinAI	ACCGGT	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	568
RsaI	GTAC	3 cut(s)	126, 584, 638
RsaNI	GTAC	3 cut(s)	125, 583, 637
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	432, 462, 558, 680
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	2 cut(s)	34, 190
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	4 cut(s)	406, 445, 503, 558
SfaNI	GCATC	2 cut(s)	337, 377
SfuI	TTCGAA	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	7 cut(s)	136, 320, 368, 420, 429, 465, 593
SspI	AATATT	2 cut(s)	246, 694
SspMI	CTAG	2 cut(s)	408, 498
TaaI	ACNGT	1 cut(s)	714
TaqI	TCGA	3 cut(s)	37, 385, 605
TasI	AATT	7 cut(s)	136, 320, 368, 420, 429, 465, 593
TatI	WGTACW	2 cut(s)	124, 582
TfiI	GAWTC	2 cut(s)	607, 641
Tru1I	TTAA	4 cut(s)	432, 462, 558, 680
Tru9I	TTAA	4 cut(s)	432, 462, 558, 680
TscAI	CASTG	3 cut(s)	312, 322, 513
TseI	GCWGC	1 cut(s)	413
TspRI	CASTG	3 cut(s)	312, 322, 513
XapI	RAATTY	2 cut(s)	320, 465
XmiI	GTMKAC	2 cut(s)	296, 453
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	408, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.