Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

28998270 .. 29005774

Gene Structure 7505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39268.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGAGTCTTACTGAATTCGTGCATCATTATGACAAACAGATAGAACAAATGCGTTCAGCTGAATTGGAAGAGACTTTTCAATGCAATAATGGAATACCTTCAAGTTCTGCAAAGAGTAGTGGAATTAAGAAGCAAGCTGGTATGGTCTACACCCGAAAAATTTTCAATTTATTTGAGTCTGAGTTTATTGCTAGCTTGGCAGTGAAGATCGAGGAAGTTGGATGTGATGGGACATTGCGGAAATTTGAACTTAATGAGGAGGGCCACAAAAGAGTGTACATTGTCCAATTCGATTCTTCGAATGTGACCATCACTCGTAGTTGTCAGATGTATGAATCTATGGGTTGGTTATGTCGTCATGCTTTGAGGGTGTTAAATGTAAAAAATGTTACTCAAATCCCAGCACAGAATTCTTTAATGCGGAAAGCTTATGGTATAATCAGTAAGGGAGCAGAGTCCACTACTGGTAGCGAAATTGCATTACAGAAGTTGATAGAAGCAGAAGAGTTAATTGAAAAGAATATGAAGAAGCTATCTATGAGGGATTCAGGTGTCAATACTTCTAGTTCTGGTGGTAACAAGAATCAACCCCTATCTGATGAACCACCAGTACTAAATCCAGCAGGAGTGTGGCCGAAAGGCATGAGTAATAAAAGAATGAAATCTGAAATGGAGAAGAAACAAAACAAAAAAGCACCGAAAGGTCGAGGTTCTGGAAAAATGAAGCCACCAAGCAGTGAAGGACCCTCACATGCGTCAGTACCTGTAGTCGATAACTCTAGCTTGCTTAACTCATTTGTTGCAACGAGTGCTACATATCCAACTAACCAGCAATTTCCAACTATGAGCTTCCCAGTATCTGATGTCTATGCTCCATACACTCTATATAATCAGAATCCTGCTTCTGTGTTGCCATTTTCTCAACTCAATTTACCATATGCAAATATGCATCAAGGGGGCAACTATATCACACAATTGAATCAGAATACATCCATAAGGAGTACTACCAATTTATTTAGTCACATTCCTCAAGAGAGCCAGGTTGATAGTTTGCTTGGTGCTCGTGGTGGTTCTTTTGAGCATGAGGCAACTAGAAGAATGAGAAATGAGTTCATGGCAATGGCAGCTTGGGATGGATTGCGATCTAAAGACAGTCAAAGAATACTCATTCTCGGTGCCACAAATCGGCCATTTGACCTTGATGATGTTGTCATTCGTAGCTTACCAAGAAGGACATATGTTGATTTACCAGATGTTGAAAATCGTAAGAAGATTTTAAGTATATTTCTAGCTCAAGAGAATCTGGAACCTGGTTTCCAATTTGAGAAACTTTCAGAGGCAACAGAGGGATACTCTGGCAGGTGTTACAACTTGAAGAACCTTTGTATTGGTGCTGCATATAGGCCTGTCCAGGAACTATTAGAAGAAGAAACCAAGGGCAGCAAAGGTGATTCATCTGCAGCTTTAAGGCCAGTTAATTTAGATGACTTTATTCAATCAAAAGCCAAGGTGAAAAGCTCTTCCAAGTTATTGTGTTCCTTCCTGTATAGTAGGTTGGGCCATCTGTGTCATATGATGCTGCAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

530

Amino Acids

58.99

Weight (kDa)

8.94

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1350
Acc36I	ACCTGC	1 cut(s)	1350
AccB1I	GGYRCC	1 cut(s)	1175
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	2 cut(s)	238, 421
AcoI	YGGCCR	2 cut(s)	632, 1187
AcsI	RAATTY	4 cut(s)	14, 159, 242, 409
AfaI	GTAC	4 cut(s)	278, 612, 762, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	1185
AgsI	TTSAA	9 cut(s)	80, 102, 166, 248, 515, 979, 1259, 1375, 1496
AjnI	CCWGG	3 cut(s)	1038, 1309, 1410
AloI	GAACNNNNNNTCC	2 cut(s)	1299, 1331
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	1 cut(s)	65
AlwNI	CAGNNNCTG	2 cut(s)	764, 860
AoxI	GGCC	6 cut(s)	262, 632, 1187, 1403, 1469, 1558
ApeKI	GCWGC	5 cut(s)	1124, 1394, 1440, 1460, 1579
ApoI	RAATTY	4 cut(s)	14, 159, 242, 409
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	262, 743, 1558
AsuHPI	GGTGA	2 cut(s)	1460, 1522
AsuII	TTCGAA	1 cut(s)	299
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	1175
BauI	CACGAG	1 cut(s)	1062
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	5 cut(s)	1136, 1381, 1452, 1472, 1566
BccI	CCATC	4 cut(s)	221, 317, 1127, 1569
BciT130I	CCWGG	3 cut(s)	1040, 1311, 1412
BciVI	GTATCC	1 cut(s)	1343
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	5 cut(s)	192, 564, 780, 1092, 1289
BfmI	CTRYAG	2 cut(s)	765, 1458
BfuAI	ACCTGC	1 cut(s)	1350
BfuI	GTATCC	1 cut(s)	1343
BisI	GCNGC	5 cut(s)	1125, 1395, 1441, 1461, 1580
BlsI	GCNGC	5 cut(s)	1126, 1396, 1442, 1462, 1581
BmcAI	AGTACT	2 cut(s)	612, 1003
Bme1390I	CCNGG	3 cut(s)	1040, 1311, 1412
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	3 cut(s)	262, 743, 1558
BmiI	GGNNCC	3 cut(s)	745, 1177, 1308
BmrFI	CCNGG	3 cut(s)	1040, 1311, 1412
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	3 cut(s)	31, 958, 1566
BmtI	GCTAGC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	848
BplI	GAGNNNNNCTC	2 cut(s)	1337, 1369
Bpu14I	TTCGAA	1 cut(s)	299
BpuEI	CTTGAG	2 cut(s)	1014, 1278
BsaBI	GATNNNNATC	1 cut(s)	1141
BsaJI	CCNNGG	2 cut(s)	1434, 1506
Bsc4I	CCNNNNNNNGG	1 cut(s)	1185
Bse1I	ACTGG	4 cut(s)	469, 608, 854, 1472
Bse3DI	GCAATG	2 cut(s)	233, 1125
Bse8I	GATNNNNATC	1 cut(s)	1141
BseBI	CCWGG	3 cut(s)	1040, 1311, 1412
BseDI	CCNNGG	2 cut(s)	1434, 1506
BseGI	GGATG	3 cut(s)	227, 989, 1138
BseJI	GATNNNNATC	1 cut(s)	1141
BseLI	CCNNNNNNNGG	1 cut(s)	1185
BseMI	GCAATG	2 cut(s)	233, 1125
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	4 cut(s)	469, 608, 854, 1472
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	1136, 1381, 1452, 1472, 1566
BseYI	CCCAGC	1 cut(s)	400
BshFI	GGCC	6 cut(s)	264, 634, 1189, 1405, 1471, 1560
BshNI	GGYRCC	1 cut(s)	1175
BsiHKAI	GWGCWC	1 cut(s)	1063
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	1185
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	6 cut(s)	264, 634, 1189, 1405, 1471, 1560
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	207, 1142
BspACI	CCGC	2 cut(s)	238, 421
BspANI	GGCC	6 cut(s)	264, 634, 1189, 1405, 1471, 1560
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	745, 1177, 1308
BspMAI	CTGCAG	1 cut(s)	1462
BspMI	ACCTGC	1 cut(s)	1350
BspOI	GCTAGC	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	1525
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	1175
BsrDI	GCAATG	2 cut(s)	233, 1125
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	4 cut(s)	469, 608, 854, 1472
BssECI	CCNNGG	2 cut(s)	1434, 1506
BssMI	GATC	2 cut(s)	207, 1142
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	2 cut(s)	1434, 1506
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	3 cut(s)	1040, 1311, 1412
Bst4CI	ACNGT	1 cut(s)	1154
Bst6I	CTCTTC	3 cut(s)	63, 498, 1525
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstAUI	TGTACA	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	135, 193, 785
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	227, 989, 1138
BstKTI	GATC	2 cut(s)	210, 1145
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	207, 1142
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 809, 1124
BstNI	CCWGG	3 cut(s)	1040, 1311, 1412
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	3 cut(s)	1038, 1309, 1410
BstSFI	CTRYAG	2 cut(s)	765, 1458
BstV1I	GCAGC	5 cut(s)	1136, 1381, 1452, 1472, 1566
BsuI	GTATCC	1 cut(s)	1343
BsuRI	GGCC	6 cut(s)	264, 634, 1189, 1405, 1471, 1560
BtsCI	GGATG	3 cut(s)	227, 989, 1138
BtsI	GCAGTG	2 cut(s)	207, 742
BtsIMutI	CAGTG	2 cut(s)	207, 742
BveI	ACCTGC	1 cut(s)	1350
Cac8I	GCNNGC	3 cut(s)	135, 193, 785
CaiI	CAGNNNCTG	2 cut(s)	764, 860
Cfr13I	GGNCC	3 cut(s)	262, 743, 1558
CseI	GACGC	1 cut(s)	744
CsiI	ACCWGGT	1 cut(s)	1309
Csp6I	GTAC	4 cut(s)	277, 611, 761, 1002
CviAII	CATG	5 cut(s)	359, 643, 752, 1082, 1114
CviQI	GTAC	4 cut(s)	277, 611, 761, 1002
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	209, 1144
DpnII	GATC	2 cut(s)	207, 1142
EaeI	YGGCCR	2 cut(s)	632, 1187
Eam1104I	CTCTTC	3 cut(s)	63, 498, 1525
EarI	CTCTTC	3 cut(s)	63, 498, 1525
Eco130I	CCWWGG	2 cut(s)	1434, 1506
Eco147I	AGGCCT	1 cut(s)	1405
Eco47I	GGWCC	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRI	GAATTC	2 cut(s)	14, 409
EcoRII	CCWGG	3 cut(s)	1038, 1309, 1410
EcoT14I	CCWWGG	2 cut(s)	1434, 1506
EcoT22I	ATGCAT	1 cut(s)	951
ErhI	CCWWGG	2 cut(s)	1434, 1506
FaeI	CATG	5 cut(s)	362, 646, 755, 1085, 1117
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	5 cut(s)	358, 642, 751, 1081, 1113
FauNDI	CATATG	3 cut(s)	937, 1237, 1572
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	5 cut(s)	1125, 1395, 1441, 1461, 1580
FokI	GGATG	3 cut(s)	234, 976, 1145
Fsp4HI	GCNGC	5 cut(s)	1125, 1395, 1441, 1461, 1580
FspBI	CTAG	5 cut(s)	192, 564, 780, 1092, 1289
GluI	GCNGC	5 cut(s)	1125, 1395, 1441, 1461, 1580
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	6 cut(s)	264, 634, 1189, 1405, 1471, 1560
HgaI	GACGC	1 cut(s)	744
Hin1II	CATG	5 cut(s)	362, 646, 755, 1085, 1117
HindIII	AAGCTT	1 cut(s)	426
HphI	GGTGA	2 cut(s)	1460, 1522
Hpy166II	GTNNAC	3 cut(s)	148, 277, 459
Hpy188I	TCNGA	8 cut(s)	181, 327, 598, 667, 862, 894, 984, 1336
Hpy188III	TCNNGA	4 cut(s)	714, 1031, 1295, 1304
Hpy8I	GTNNAC	3 cut(s)	148, 277, 459
HpyAV	CCTTC	4 cut(s)	108, 734, 1224, 1549
HpyCH4III	ACNGT	1 cut(s)	1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 809, 1124
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	362, 646, 755, 1085, 1117
Kzo9I	GATC	2 cut(s)	207, 1142
LguI	GCTCTTC	1 cut(s)	1525
LmnI	GCTCC	2 cut(s)	449, 877
Lsp1109I	GCAGC	5 cut(s)	1136, 1381, 1452, 1472, 1566
LweI	GCATC	3 cut(s)	31, 958, 1566
MabI	ACCWGGT	1 cut(s)	1309
MaeI	CTAG	5 cut(s)	192, 564, 780, 1092, 1289
MaeIII	GTNAC	5 cut(s)	304, 388, 575, 1019, 1364
MalI	GATC	2 cut(s)	209, 1144
MboI	GATC	2 cut(s)	207, 1142
MfeI	CAATTG	1 cut(s)	974
MhlI	GDGCHC	1 cut(s)	1063
MlyI	GAGTC	3 cut(s)	13, 185, 464
MmeI	TCCRAC	3 cut(s)	199, 845, 863
Mph1103I	ATGCAT	1 cut(s)	951
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	9 cut(s)	126, 252, 374, 416, 509, 789, 1277, 1466, 1476
MslI	CAYNNNNRTG	2 cut(s)	27, 1118
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	1040, 1311, 1412
MunI	CAATTG	1 cut(s)	974
MvaI	CCWGG	3 cut(s)	1040, 1311, 1412
MwoI	GCNNNNNNNGC	3 cut(s)	197, 809, 1124
NdeI	CATATG	3 cut(s)	937, 1237, 1572
NdeII	GATC	2 cut(s)	207, 1142
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	5 cut(s)	362, 646, 755, 1085, 1117
NlaIV	GGNNCC	3 cut(s)	745, 1177, 1308
NmuCI	GTSAC	2 cut(s)	304, 1019
NsiI	ATGCAT	1 cut(s)	951
NspI	RCATGY	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	299
PaqCI	CACCTGC	1 cut(s)	1350
PceI	AGGCCT	1 cut(s)	1405
PciSI	GCTCTTC	1 cut(s)	1525
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	8 cut(s)	293, 335, 545, 583, 895, 979, 1300, 1451
PfoI	TCCNGGA	1 cut(s)	1410
PkrI	GCNGC	5 cut(s)	1126, 1396, 1442, 1462, 1581
PleI	GAGTC	3 cut(s)	12, 184, 463
PpsI	GAGTC	3 cut(s)	12, 184, 463
PpuMI	RGGWCCY	1 cut(s)	743
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	1038, 1309, 1410
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	3 cut(s)	1038, 1309, 1410
PspN4I	GGNNCC	3 cut(s)	745, 1177, 1308
PspPI	GGNCC	3 cut(s)	262, 743, 1558
PspPPI	RGGWCCY	1 cut(s)	743
PsrI	GAACNNNNNNTAC	2 cut(s)	594, 626
PstI	CTGCAG	1 cut(s)	1462
PstNI	CAGNNNCTG	2 cut(s)	764, 860
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	4 cut(s)	278, 612, 762, 1003
RsaNI	GTAC	4 cut(s)	277, 611, 761, 1002
RseI	CAYNNNNRTG	2 cut(s)	27, 1118
SapI	GCTCTTC	1 cut(s)	1525
SaqAI	TTAA	9 cut(s)	126, 252, 374, 416, 509, 789, 1277, 1466, 1476
SatI	GCNGC	5 cut(s)	1125, 1395, 1441, 1461, 1580
Sau3AI	GATC	2 cut(s)	207, 1142
Sau96I	GGNCC	3 cut(s)	262, 743, 1558
ScaI	AGTACT	2 cut(s)	612, 1003
SchI	GAGTC	3 cut(s)	13, 185, 464
ScrFI	CCNGG	3 cut(s)	1040, 1311, 1412
SduI	GDGCHC	1 cut(s)	1063
SexAI	ACCWGGT	1 cut(s)	1309
SfaNI	GCATC	3 cut(s)	31, 958, 1566
SfcI	CTRYAG	2 cut(s)	765, 1458
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	27, 1118
SmlI	CTYRAG	2 cut(s)	1029, 1293
SmoI	CTYRAG	2 cut(s)	1029, 1293
SseBI	AGGCCT	1 cut(s)	1405
SsiI	CCGC	2 cut(s)	238, 421
SspMI	CTAG	5 cut(s)	192, 564, 780, 1092, 1289
StuI	AGGCCT	1 cut(s)	1405
StyD4I	CCNGG	3 cut(s)	1038, 1309, 1410
StyI	CCWWGG	2 cut(s)	1434, 1506
TaaI	ACNGT	1 cut(s)	1154
TaqI	TCGA	5 cut(s)	210, 291, 299, 706, 771
TatI	WGTACW	3 cut(s)	276, 610, 1001
TfiI	GAWTC	8 cut(s)	293, 335, 545, 583, 895, 979, 1300, 1451
Tru1I	TTAA	9 cut(s)	126, 252, 374, 416, 509, 789, 1277, 1466, 1476
Tru9I	TTAA	9 cut(s)	126, 252, 374, 416, 509, 789, 1277, 1466, 1476
TscAI	CASTG	2 cut(s)	207, 742
TseFI	GTSAC	2 cut(s)	304, 1019
TseI	GCWGC	5 cut(s)	1124, 1394, 1440, 1460, 1579
Tsp45I	GTSAC	2 cut(s)	304, 1019
TspDTI	ATGAA	7 cut(s)	348, 539, 615, 674, 737, 1102, 1443
TspRI	CASTG	2 cut(s)	207, 742
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	4 cut(s)	14, 159, 242, 409
XceI	RCATGY	1 cut(s)	755
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	5 cut(s)	192, 564, 780, 1092, 1289
ZrmI	AGTACT	2 cut(s)	612, 1003
Zsp2I	ATGCAT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.