Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

40823279 .. 40825066

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGATTGTGAATTGTCAAGCTAGTAATGATGATGAATTGTATGGAGTGATTGTGAATAGTGAGGAAGAAGCTTACAACCTCTATTGTGAGTATGGTGCTAGAATGGGGTTTAGTGTTCGAATAATGCGGAAGAGGAAAACCAACAATGTTGTGAAGCAAGTTAATTATTGTTGTTCAAAAGAAGGTTTTAAACTAGACAGTGACCCTTCAGAGGTGAAAAAGGCTGATAGGCTGGACATTAGAACTGATAATAATGTATGGAAAGCGACTCTCTTTGTCCCCAAACACAACACAACCATAAGCTTGCAGACAGAAGAAGTTGGGGGATCTCAAAATGTTGGATTTACAAAGACTGATTGCTATAATTTTGTAAGCAGAGAGAGAATGATTATGCTTGAAGTAGGGGATGCTCAAAGCTTGAGCAATTTATTCAAGAGAAAGCAAATTGAAGATCCTATGTTTTTCCACACCATGCAAGTGGATCAAGAAAATCGAATGACAAATTTTTTCTGGAGAGATGAAAAGTCGAAAACTAACTTTGAATGCTTTGGGGACGTAGTAGTATTTGATACTACTTGCCGAACCCATAAGTATAACATGATTTGTGCTCGTTTCATTGGGACGACTGCTTCATTTATTTGGTTATTTGAGACATTCTTAGAAGCAATGGAAGGTAAGAAACCCAAGACTATCTTTACGGATCGATGTCTGGCAATGACAAATGCCATTAAGAAGGTCTTTCCTGAGACATGTCATCAGTTATGTCTGTGGCACATATCAAAGAATGCGCTTTTCATGAAGTTGTTTTTTGGACGTGTGACAGAAGATGAATTCAAGTCTACTTGGAATGAAATAATAGAGAAGTTTGATCTTGCAAGGAACACATGGCTCAAGACACTTTATGACTTTCGTGAAAAATGGTGTGCATTATTTAGCAAGGATACATTCTTTGCCGGAATATTATCTACACAAAGAAAACAAATGTGTTCAAGTGAATTGGAAAAGACTTTTCGATGCAATAACGGAATACCTTCTATGGCTGCAAAAAGTAATGGAATTAAGAAGCAAGTTGGTATGGTCTACACTAGAAAAATTTACAATTTATTTGAGTTTGAGTTTATCGCTAGCTTGGCAATGAAGATGGAGGAGGTTGGAAGTGATGGAATACTGCGGACATTTGAACTTAATGAGAAAGGCCATAAAAGTGTGTACATTTTATGTCGTCATGCTTTGAGGGTTTTAAACGTGAAAAATATTACTCAAATACTAACACACTATATACTAAAGAGATGGACAAAGGATGCAAAGAAAGGAGTTGAGGCAAATAGTGTACCCCTACAGGTCAAGGAGAAAACAACGGTGACATTGCGCAGGAATACTTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

462

Amino Acids

53.88

Weight (kDa)

9.03

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	27 - 83	2.8e-08	FAR1 DNA-binding domain
MULE	PF10551	208 - 262	9.3e-16	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1370
AccI	GTMKAC	2 cut(s)	839, 1080
AciI	CCGC	2 cut(s)	127, 1171
AclWI	GGATC	4 cut(s)	334, 446, 489, 708
AcsI	RAATTY	3 cut(s)	502, 830, 1092
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	2 cut(s)	1211, 1332
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	2 cut(s)	749, 814
AgsI	TTSAA	8 cut(s)	177, 398, 433, 449, 542, 835, 990, 1181
AjiI	CACGTC	1 cut(s)	815
AluBI	AGCT	5 cut(s)	20, 71, 303, 417, 1128
AluI	AGCT	5 cut(s)	20, 71, 303, 417, 1128
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	644, 740
AlwI	GGATC	4 cut(s)	334, 446, 489, 708
AoxI	GGCC	1 cut(s)	1195
ApeKI	GCWGC	1 cut(s)	1040
ApoI	RAATTY	3 cut(s)	502, 830, 1092
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspLEI	GCGC	2 cut(s)	790, 1371
AsuHPI	GGTGA	2 cut(s)	226, 1372
AsuII	TTCGAA	1 cut(s)	118
AsuNHI	GCTAGC	1 cut(s)	1124
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	1027
BccI	CCATC	3 cut(s)	1135, 1154, 1284
BciVI	GTATCC	1 cut(s)	934
BcoDI	GTCTC	2 cut(s)	644, 740
BfaI	CTAG	5 cut(s)	21, 99, 194, 1086, 1125
BfmI	CTRYAG	1 cut(s)	1337
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	1 cut(s)	1041
BlsI	GCNGC	1 cut(s)	1042
BmgBI	CACGTC	1 cut(s)	815
BmsI	GCATC	3 cut(s)	397, 1004, 1291
BmtI	GCTAGC	1 cut(s)	1128
BpmI	CTGGAG	1 cut(s)	532
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	2 cut(s)	439, 875
Bsa29I	ATCGAT	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse3DI	GCAATG	4 cut(s)	672, 720, 1140, 1364
BseCI	ATCGAT	1 cut(s)	703
BseGI	GGATG	2 cut(s)	412, 1306
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	4 cut(s)	672, 720, 1140, 1364
BseMII	CTCAG	1 cut(s)	735
BseRI	GAGGAG	1 cut(s)	1160
BseXI	GCAGC	1 cut(s)	1027
BshFI	GGCC	1 cut(s)	1197
BshVI	ATCGAT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	954
BslFI	GGGAC	3 cut(s)	263, 566, 634
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	644, 740
BsmFI	GGGAC	3 cut(s)	263, 566, 634
BsmI	GAATGC	2 cut(s)	548, 790
BsnI	GGCC	1 cut(s)	1197
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	1209
Bsp143I	GATC	5 cut(s)	326, 451, 481, 700, 868
BspACI	CCGC	2 cut(s)	127, 1171
BspANI	GGCC	1 cut(s)	1197
BspCNI	CTCAG	1 cut(s)	736
BspDI	ATCGAT	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	795
BspOI	GCTAGC	1 cut(s)	1128
BspPI	GGATC	4 cut(s)	334, 446, 489, 708
BspT104I	TTCGAA	1 cut(s)	118
BsrDI	GCAATG	4 cut(s)	672, 720, 1140, 1364
BsrGI	TGTACA	1 cut(s)	1209
BssMI	GATC	5 cut(s)	326, 451, 481, 700, 868
Bst4CI	ACNGT	2 cut(s)	200, 1360
Bst6I	CTCTTC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	1209
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	305, 1126
BstDEI	CTNAG	2 cut(s)	658, 744
BstF5I	GGATG	2 cut(s)	412, 1306
BstHHI	GCGC	2 cut(s)	790, 1371
BstKTI	GATC	5 cut(s)	329, 454, 484, 703, 871
BstMAI	GTCTC	2 cut(s)	644, 740
BstMBI	GATC	5 cut(s)	326, 451, 481, 700, 868
BstMWI	GCNNNNNNNGC	1 cut(s)	1130
BstNSI	RCATGY	1 cut(s)	753
BstSFI	CTRYAG	1 cut(s)	1337
BstV1I	GCAGC	1 cut(s)	1027
BstX2I	RGATCY	2 cut(s)	326, 451
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	2 cut(s)	326, 451
Bsu15I	ATCGAT	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	1 cut(s)	1197
BsuTUI	ATCGAT	1 cut(s)	703
BtrI	CACGTC	1 cut(s)	815
BtsCI	GGATG	2 cut(s)	412, 1306
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	305, 1126
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	2 cut(s)	790, 1371
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	1210, 1331
CviAII	CATG	6 cut(s)	472, 598, 750, 796, 885, 1226
CviQI	GTAC	2 cut(s)	1210, 1331
DdeI	CTNAG	2 cut(s)	658, 744
DpnI	GATC	5 cut(s)	328, 453, 483, 702, 870
DpnII	GATC	5 cut(s)	326, 451, 481, 700, 868
DraI	TTTAAA	2 cut(s)	190, 1242
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	830
FaeI	CATG	6 cut(s)	475, 601, 753, 799, 888, 1229
FalI	AAGNNNNNCTT	4 cut(s)	677, 709, 722, 754
FaqI	GGGAC	3 cut(s)	263, 566, 634
FatI	CATG	6 cut(s)	471, 597, 749, 795, 884, 1225
FblI	GTMKAC	2 cut(s)	839, 1080
Fnu4HI	GCNGC	1 cut(s)	1041
FokI	GGATG	2 cut(s)	419, 1313
Fsp4HI	GCNGC	1 cut(s)	1041
FspBI	CTAG	5 cut(s)	21, 99, 194, 1086, 1125
FspI	TGCGCA	1 cut(s)	1370
GlaI	GCGC	2 cut(s)	789, 1370
GluI	GCNGC	1 cut(s)	1041
GsuI	CTGGAG	1 cut(s)	532
HaeIII	GGCC	1 cut(s)	1197
HapII	CCGG	1 cut(s)	954
HhaI	GCGC	2 cut(s)	790, 1371
Hin1II	CATG	6 cut(s)	475, 601, 753, 799, 888, 1229
Hin6I	GCGC	2 cut(s)	788, 1369
HinP1I	GCGC	2 cut(s)	788, 1369
HindIII	AAGCTT	3 cut(s)	69, 301, 415
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	954
HphI	GGTGA	2 cut(s)	226, 1372
Hpy166II	GTNNAC	4 cut(s)	840, 1081, 1210, 1331
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	7 cut(s)	433, 485, 511, 743, 796, 892, 911
Hpy8I	GTNNAC	4 cut(s)	840, 1081, 1210, 1331
HpyAV	CCTTC	5 cut(s)	176, 216, 665, 727, 1041
HpyCH4III	ACNGT	2 cut(s)	200, 1360
HpyCH4IV	ACGT	3 cut(s)	555, 814, 1245
HpyCH4V	TGCA	7 cut(s)	307, 475, 875, 926, 1017, 1043, 1304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1130
HpyF3I	CTNAG	2 cut(s)	658, 744
HpySE526I	ACGT	3 cut(s)	555, 814, 1245
Hsp92II	CATG	6 cut(s)	475, 601, 753, 799, 888, 1229
HspAI	GCGC	2 cut(s)	788, 1369
Kzo9I	GATC	5 cut(s)	326, 451, 481, 700, 868
LpnPI	CCDG	7 cut(s)	218, 496, 695, 756, 967, 1325, 1357
Lsp1109I	GCAGC	1 cut(s)	1027
LweI	GCATC	3 cut(s)	397, 1004, 1291
MaeI	CTAG	5 cut(s)	21, 99, 194, 1086, 1125
MaeII	ACGT	3 cut(s)	555, 814, 1245
MaeIII	GTNAC	3 cut(s)	200, 817, 1360
MalI	GATC	5 cut(s)	328, 453, 483, 702, 870
MboI	GATC	5 cut(s)	326, 451, 481, 700, 868
MboII	GAAGA	6 cut(s)	77, 142, 326, 461, 836, 1150
MflI	RGATCY	2 cut(s)	326, 451
MhlI	GDGCHC	1 cut(s)	610
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	2 cut(s)	319, 1132
MnlI	CCTC	8 cut(s)	55, 89, 126, 205, 1138, 1141, 1227, 1312
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	7 cut(s)	162, 189, 729, 1059, 1185, 1241, 1382
MslI	CAYNNNNRTG	2 cut(s)	476, 1203
MspI	CCGG	1 cut(s)	954
Mva1269I	GAATGC	2 cut(s)	548, 790
MwoI	GCNNNNNNNGC	1 cut(s)	1130
NdeII	GATC	5 cut(s)	326, 451, 481, 700, 868
NheI	GCTAGC	1 cut(s)	1124
NlaIII	CATG	6 cut(s)	475, 601, 753, 799, 888, 1229
NmuCI	GTSAC	3 cut(s)	200, 817, 1360
NsbI	TGCGCA	1 cut(s)	1370
NspI	RCATGY	1 cut(s)	753
NspV	TTCGAA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	795
PciI	ACATGT	1 cut(s)	749
PctI	GAATGC	2 cut(s)	548, 790
PdmI	GAANNNNTTC	1 cut(s)	1030
PkrI	GCNGC	1 cut(s)	1042
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PscI	ACATGT	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	326, 451
RsaI	GTAC	2 cut(s)	1211, 1332
RsaNI	GTAC	2 cut(s)	1210, 1331
RseI	CAYNNNNRTG	2 cut(s)	476, 1203
SaqAI	TTAA	7 cut(s)	162, 189, 729, 1059, 1185, 1241, 1382
SatI	GCNGC	1 cut(s)	1041
Sau3AI	GATC	5 cut(s)	326, 451, 481, 700, 868
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	397, 1004, 1291
SfcI	CTRYAG	1 cut(s)	1337
SfuI	TTCGAA	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	476, 1203
SmlI	CTYRAG	2 cut(s)	418, 890
SmoI	CTYRAG	2 cut(s)	418, 890
SsiI	CCGC	2 cut(s)	127, 1171
SspI	AATATT	2 cut(s)	960, 1255
SspMI	CTAG	5 cut(s)	21, 99, 194, 1086, 1125
TaaI	ACNGT	2 cut(s)	200, 1360
TaiI	ACGT	3 cut(s)	558, 817, 1248
TaqI	TCGA	5 cut(s)	118, 493, 527, 703, 1012
TatI	WGTACW	1 cut(s)	1209
Tru1I	TTAA	7 cut(s)	162, 189, 729, 1059, 1185, 1241, 1382
Tru9I	TTAA	7 cut(s)	162, 189, 729, 1059, 1185, 1241, 1382
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	3 cut(s)	200, 817, 1360
TseI	GCWGC	1 cut(s)	1040
Tsp45I	GTSAC	3 cut(s)	200, 817, 1360
TspDTI	ATGAA	9 cut(s)	48, 534, 604, 621, 784, 812, 843, 864, 1151
TspGWI	ACGGA	2 cut(s)	713, 1038
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	3 cut(s)	502, 830, 1092
XceI	RCATGY	1 cut(s)	753
XmiI	GTMKAC	2 cut(s)	839, 1080
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	5 cut(s)	21, 99, 194, 1086, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.