FvH4_5g08846

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004523
Physical Location & Seq
Forward (+)
5104696 .. 5105361
666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08846.t1

Sequence Viewer

Length: 666 bp
ATGCTTTCAGCTGAACTGGAAGAGACTTTTCGATGCAATAACGGAATACCTTCAAGTTCTGCAAAGAGTAGTGGAATTAAGAAGCAAGCTGGTATGGTCTACACCCGAAAAATTTTCAATTTATTTGAGTCTGAGTTTATTGCTAGCTTGGCAGTGAAGATGGAGGAAGTTGGATGTGATGGGACATTGCGGAAATTTGAACTTAATGAGGAGGGCCACAAAAGAGTGTACATTGTCCAATTTGATTCTTCGAATCTGACCATCACTTGTAGTTGTCAGATGTATGAATCTATGGGTTGGTTATGTCGTCATGCTTTGAGGGTGTCAAATGTGAAAAATGTTACTCAAATCCCAGCACAATATATACTGAAGAGATGGACAAAAGATGCAAACAATGTAGAACTGCAAGTCAAGGAGAAATCCACTGTGACATTGCGTAGGAATTCTTTAATGCGGAAAGCTTATGGTATAATCAGTAAGGGAGCAGAGTCCACTACTGGTAGCGAAATTGCATTACAGAAGTTGACAGAAGCAGAAGAGTTAATTGAAAAGAATATGAAGAAGCTATCTATGAGGGATTCAGGTGTCAATACTTCTAGTTCTGGTGGTAACAAGAATCAACCTCTATCTGATGAACCACCAGTACTAAATCCAGCAGGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

222

Amino Acids

24.58

Weight (kDa)

8.9

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 77 - 112 5e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AciI CCGC 2 cut(s) 190, 454
AcsI RAATTY 3 cut(s) 111, 194, 442
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 2 cut(s) 230, 645
AgsI TTSAA 4 cut(s) 54, 118, 200, 548
AluBI AGCT 5 cut(s) 11, 89, 147, 461, 565
AluI AGCT 5 cut(s) 11, 89, 147, 461, 565
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 1 cut(s) 214
ApoI RAATTY 3 cut(s) 111, 194, 442
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 143
BccI CCATC 4 cut(s) 154, 173, 269, 369
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 2 cut(s) 144, 597
BmcAI AGTACT 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 214
BmsI GCATC 2 cut(s) 23, 376
BmtI GCTAGC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 21, 502, 641
Bse3DI GCAATG 2 cut(s) 185, 431
BseGI GGATG 1 cut(s) 179
BseMI GCAATG 2 cut(s) 185, 431
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 3 cut(s) 21, 502, 641
BseRI GAGGAG 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 352
BshFI GGCC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 228
BspACI CCGC 2 cut(s) 190, 454
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 185, 431
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 3 cut(s) 21, 502, 641
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 3 cut(s) 15, 365, 531
BstAUI TGTACA 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 87, 145
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 423
Cac8I GCNNGC 2 cut(s) 87, 145
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 229, 644
CviAII CATG 1 cut(s) 311
CviJI RGCY 6 cut(s) 11, 89, 147, 216, 461, 565
CviKI_1 RGCY 6 cut(s) 11, 89, 147, 216, 461, 565
CviQI GTAC 2 cut(s) 229, 644
DdeI CTNAG 1 cut(s) 132
Eam1104I CTCTTC 3 cut(s) 15, 365, 531
EarI CTCTTC 3 cut(s) 15, 365, 531
Eco57I CTGAAG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 442
FaeI CATG 1 cut(s) 314
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 310
FblI GTMKAC 1 cut(s) 99
FokI GGATG 1 cut(s) 186
FspBI CTAG 2 cut(s) 144, 597
GsaI CCCAGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 216
Hin1II CATG 1 cut(s) 314
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 7 cut(s) 128, 245, 253, 287, 488, 578, 616
Hpy166II GTNNAC 4 cut(s) 100, 229, 492, 525
Hpy188I TCNGA 4 cut(s) 133, 258, 279, 631
Hpy8I GTNNAC 4 cut(s) 100, 229, 492, 525
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 36, 62, 389, 406, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 314
LmnI GCTCC 1 cut(s) 482
LpnPI CCDG 8 cut(s) 2, 75, 366, 483, 567, 588, 642, 654
LweI GCATC 2 cut(s) 23, 376
MaeI CTAG 2 cut(s) 144, 597
MaeIII GTNAC 3 cut(s) 340, 427, 608
MboII GAAGA 6 cut(s) 32, 169, 240, 382, 548, 571
MluCI AATT 8 cut(s) 75, 111, 118, 194, 239, 442, 507, 543
MlyI GAGTC 2 cut(s) 137, 497
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 157, 202, 205, 312, 567, 633
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 4 cut(s) 78, 204, 449, 542
MspA1I CMGCKG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 149
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 427
NspV TTCGAA 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 5 cut(s) 245, 253, 287, 578, 616
PleI GAGTC 2 cut(s) 136, 496
PpsI GAGTC 2 cut(s) 136, 496
PspFI CCCAGC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 230, 645
RsaNI GTAC 2 cut(s) 229, 644
SaqAI TTAA 4 cut(s) 78, 204, 449, 542
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 645
SchI GAGTC 2 cut(s) 137, 497
SetI ASST 8 cut(s) 13, 52, 91, 149, 463, 567, 586, 625
SfaNI GCATC 2 cut(s) 23, 376
SfuI TTCGAA 1 cut(s) 251
Sse9I AATT 8 cut(s) 75, 111, 118, 194, 239, 442, 507, 543
SsiI CCGC 2 cut(s) 190, 454
SspMI CTAG 2 cut(s) 144, 597
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 31, 251
TasI AATT 8 cut(s) 75, 111, 118, 194, 239, 442, 507, 543
TatI WGTACW 2 cut(s) 228, 643
TfiI GAWTC 5 cut(s) 245, 253, 287, 578, 616
Tru1I TTAA 4 cut(s) 78, 204, 449, 542
Tru9I TTAA 4 cut(s) 78, 204, 449, 542
TscAI CASTG 2 cut(s) 159, 430
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 300, 572, 648
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 2 cut(s) 159, 430
XapI RAATTY 3 cut(s) 111, 194, 442
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 2 cut(s) 144, 597
ZrmI AGTACT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.