Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Reverse (-)

62346061 .. 62351938

Gene Structure 5878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAAATGCTATTGAGAAGGTTTTTCCTGAGACACGCCATCGGTTATGTTTGTGGCACACATCAAAGAATGTGGTACAAAACTTGAATTGGCTTTATAGAAATCCTAATTTCAGTGAGCTTTTCAAGAAGTTTCTTTTTGGACGTGTGACAGAAGATGAATTTGAGTCTACTTGGAATGAAATAATAGAGAAGTTTGATCTTGCAGGGAACACATGGCTCAAGACACTTTATGACCTTCGTGAAAAATGGTGTGCATTATTTAGTAAAGATACATTCTCTGCAGGAATATTATCTCCACAAACACTACTACAAAAACTGCATCACACAACGGTGGAAATCTGTTGTGTGATGTGGACCATTGAAAGAAGTGAGAGCACAAATAATGTGTTTACCCTCATGTCTACTAAAACACTGAATTTTACTGAATTTGTGCATCATTATGATAAACAGGCAGAACAAATGCGTTCAAGTGAATTGGAAGAGACTTTTCGGTGCAATAATGGAATACCTACTAGGGCTGCAAGAAGTATTGGAATTAAGAAGCAAGATGTTATGGTCTACACCCGAAAAATTTATAATTTATTTGAGTTTGAGTTTGTCGCTAGCTTGGCAGTGAAGATGGAGGAAGTTGGAAGTGATGGAACATTGCAGACATTTGAACTTAATGAGGAGGGTCATACAAGAGTGTACATTGTTCTATTCAATTCTTCAAATCTGACCATCTCTTGTAGTTGTCAGATGTATGAATCTATGGACTGGTTACGCCGTCATGCTTTGAGGGTGTTAAATGTGAAAAATATTACTCAAATACCAACACCGTATATACTAAAGAGATGGACAAAAGATGCAAAGAAAGGAGTAGAGGCAAATAGTGTACCACTACAGGTCAAGGAGAAATCAACAGTGACATTACGTAGGAATACTTTAATGCGAAAAGCTTATGCTATAATTAGTAAGGGAGCAGAGACAACTAGTGGTAGTGATATCGCGATGCAGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

335

Amino Acids

38.98

Weight (kDa)

8.83

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccI	GTMKAC	3 cut(s)	170, 404, 561
AccII	CGCG	1 cut(s)	992
AcsI	RAATTY	4 cut(s)	161, 418, 428, 573
AfaI	GTAC	3 cut(s)	78, 692, 879
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	7 cut(s)	88, 127, 365, 471, 662, 706, 714
AhlI	ACTAGT	1 cut(s)	974
AjiI	CACGTC	1 cut(s)	146
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	3 cut(s)	121, 609, 941
AluI	AGCT	3 cut(s)	121, 609, 941
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	3 cut(s)	26, 479, 962
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	4 cut(s)	161, 418, 428, 573
AspS9I	GGNCC	1 cut(s)	357
AsuNHI	GCTAGC	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	5 cut(s)	48, 616, 635, 731, 831
BceAI	ACGGC	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	26, 479, 962
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	3 cut(s)	516, 606, 975
BfmI	CTRYAG	2 cut(s)	282, 884
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	357
BmsI	GCATC	4 cut(s)	331, 445, 838, 984
BmtI	GCTAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	917
Bse1I	ACTGG	1 cut(s)	764
Bse3DI	GCAATG	1 cut(s)	647
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	992
BsiHKAI	GWGCWC	1 cut(s)	380
BsmAI	GTCTC	3 cut(s)	26, 479, 962
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	1 cut(s)	199
Bsp68I	TCGCGA	1 cut(s)	992
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	992
BspMAI	CTGCAG	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	764
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	334, 822, 907
Bst6I	CTCTTC	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	690
BstBAI	YACGTR	1 cut(s)	917
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	992
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	3 cut(s)	26, 479, 962
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstSFI	CTRYAG	2 cut(s)	282, 884
BstSNI	TACGTA	1 cut(s)	917
BstUI	CGCG	1 cut(s)	992
BstV1I	GCAGC	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	4 cut(s)	121, 413, 621, 912
BtuMI	TCGCGA	1 cut(s)	992
Cac8I	GCNNGC	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	77, 691, 878
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviAII	CATG	3 cut(s)	216, 400, 773
CviJI	RGCY	6 cut(s)	94, 121, 220, 521, 609, 941
CviKI_1	RGCY	6 cut(s)	94, 121, 220, 521, 609, 941
CviQI	GTAC	3 cut(s)	77, 691, 878
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco105I	TACGTA	1 cut(s)	917
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	988
FaeI	CATG	3 cut(s)	219, 403, 776
FatI	CATG	3 cut(s)	215, 399, 772
FblI	GTMKAC	3 cut(s)	170, 404, 561
Fnu4HI	GCNGC	1 cut(s)	522
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	3 cut(s)	516, 606, 975
GluI	GCNGC	1 cut(s)	522
Hin1II	CATG	3 cut(s)	219, 403, 776
HindIII	AAGCTT	1 cut(s)	939
HinfI	GANTC	2 cut(s)	167, 749
Hpy166II	GTNNAC	7 cut(s)	171, 357, 393, 405, 562, 691, 878
Hpy188I	TCNGA	2 cut(s)	720, 741
Hpy188III	TCNNGA	5 cut(s)	29, 127, 223, 242, 991
Hpy8I	GTNNAC	7 cut(s)	171, 357, 393, 405, 562, 691, 878
HpyAV	CCTTC	2 cut(s)	13, 248
HpyCH4III	ACNGT	3 cut(s)	334, 822, 907
HpyCH4IV	ACGT	2 cut(s)	145, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	145, 916
Hsp92II	CATG	3 cut(s)	219, 403, 776
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	962
LpnPI	CCDG	6 cut(s)	42, 192, 270, 437, 745, 872
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	4 cut(s)	331, 445, 838, 984
MaeI	CTAG	3 cut(s)	516, 606, 975
MaeII	ACGT	2 cut(s)	145, 916
MaeIII	GTNAC	3 cut(s)	148, 762, 907
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	167, 494, 631, 702
MhlI	GDGCHC	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	6 cut(s)	407, 619, 664, 667, 774, 859
MseI	TTAA	4 cut(s)	540, 666, 788, 929
MslI	CAYNNNNRTG	2 cut(s)	332, 441
MvnI	CGCG	1 cut(s)	992
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeII	GATC	1 cut(s)	199
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	3 cut(s)	219, 403, 776
NmuCI	GTSAC	2 cut(s)	148, 907
NruI	TCGCGA	1 cut(s)	992
OliI	CACNNNNGTG	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	749
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	917
PsiI	TTATAA	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	992
RsaI	GTAC	3 cut(s)	78, 692, 879
RsaNI	GTAC	3 cut(s)	77, 691, 878
RseI	CAYNNNNRTG	2 cut(s)	332, 441
SaqAI	TTAA	4 cut(s)	540, 666, 788, 929
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	9 cut(s)	24, 123, 148, 240, 514, 611, 891, 919, 943
SfaNI	GCATC	4 cut(s)	331, 445, 838, 984
SfcI	CTRYAG	2 cut(s)	282, 884
SinI	GGWCC	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	332, 441
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SnaBI	TACGTA	1 cut(s)	917
SpeI	ACTAGT	1 cut(s)	974
SspI	AATATT	2 cut(s)	291, 802
SspMI	CTAG	3 cut(s)	516, 606, 975
TaaI	ACNGT	3 cut(s)	334, 822, 907
TaiI	ACGT	2 cut(s)	148, 919
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	4 cut(s)	540, 666, 788, 929
Tru9I	TTAA	4 cut(s)	540, 666, 788, 929
TscAI	CASTG	4 cut(s)	121, 420, 621, 912
TseFI	GTSAC	2 cut(s)	148, 907
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	2 cut(s)	148, 907
TspDTI	ATGAA	3 cut(s)	174, 195, 762
TspRI	CASTG	4 cut(s)	121, 420, 621, 912
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	4 cut(s)	161, 418, 428, 573
XmiI	GTMKAC	3 cut(s)	170, 404, 561
XspI	CTAG	3 cut(s)	516, 606, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.