Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014091.1

Orthogroup ID

OG0004523

Physical Location & Seq

Genomic Coordinates Forward (+)

315 .. 851

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtctactaaaacactgagtctcactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaagtgaattggaagagacttttcgatgcaataacggaatacctactagggctgcaaaaagtagtggaattaagaagcaagctggtatggtctacactcgaaaaatttataatttatttgagtttgagtttatcgctagcttggcagtgaagatggaggaagttggaagtgatgggacattgcagacatttgagcttaatgaggagggccataaaagagtgtacattgtccaattcaattcttcgaatctgaccatctcctgtagttgtcagatgtacgaatctatgggctggttatgtcgtcatactttgagggttttgaatgtgaaaaatattactcaaataccgacacagtatatactaaagagatggacaaaggatgcaaagaaaggagttgaggcaaatagtgtaccagtacaagtcaacggtgacattgcgaaggaatactttaatgcgaaaggcttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

178

Amino Acids

20.33

Weight (kDa)

8.83

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19192 FvH4_2g28081 FvH4_3g38531 FvH4_4g08901 FvH4_4g10602 FvH4_5g08846 FvH4_5g35621 FvH4_5g39268 FvH4_6g16341 FvH4_6g16871
prunus_persica	Prupe.1G223100_v2.0.a1
pyrus_communis	pycom13g15010
rosa_multiflora	Rmu_sc0000685.1_g000016 Rmu_sc0001531.1_g000026 Rmu_sc0002147.1_g000003 Rmu_sc0002902.1_g000036 Rmu_sc0003862.1_g000021 Rmu_sc0003862.1_g000022 Rmu_sc0004821.1_g000010 Rmu_sc0014091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027570
rosa_rugosa	Rorug05G0276000
rosa_wichuraiana	Rw1G006610 Rw2G015080 Rw2G044360 Rw3G015500 Rw3G025940 Rw4G003790 Rw5G035860 Rw7G029410 Rw7G029850 Rw7G029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	5, 162
AcsI	RAATTY	2 cut(s)	29, 174
AfaI	GTAC	4 cut(s)	293, 347, 480, 486
AgsI	TTSAA	3 cut(s)	72, 307, 391
AluBI	AGCT	3 cut(s)	152, 210, 265
AluI	AGCT	3 cut(s)	152, 210, 265
Alw26I	GTCTC	2 cut(s)	26, 80
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	29, 174
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	4 cut(s)	217, 236, 332, 432
BcoDI	GTCTC	2 cut(s)	26, 80
BfaI	CTAG	2 cut(s)	117, 207
BfmI	CTRYAG	1 cut(s)	331
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	277
BmsI	GCATC	3 cut(s)	46, 86, 439
BmtI	GCTAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	2 cut(s)	248, 501
BseGI	GGATG	1 cut(s)	454
BseMI	GCAATG	2 cut(s)	248, 501
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	26, 80
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	291
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	9
BspOI	GCTAGC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	248, 501
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	423, 497
Bst6I	CTCTTC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	150, 208
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	454
BstMAI	GTCTC	2 cut(s)	26, 80
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	14, 24, 222
Cac8I	GCNNGC	2 cut(s)	150, 208
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	4 cut(s)	292, 346, 479, 485
CviJI	RGCY	7 cut(s)	122, 152, 210, 265, 279, 360, 531
CviKI_1	RGCY	7 cut(s)	122, 152, 210, 265, 279, 360, 531
CviQI	GTAC	4 cut(s)	292, 346, 479, 485
DdeI	CTNAG	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	259
FblI	GTMKAC	2 cut(s)	5, 162
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	117, 207
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	3 cut(s)	19, 316, 350
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	5 cut(s)	6, 163, 292, 479, 493
Hpy188I	TCNGA	2 cut(s)	321, 342
Hpy8I	GTNNAC	5 cut(s)	6, 163, 292, 479, 493
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	2 cut(s)	423, 497
HpyCH4V	TGCA	5 cut(s)	37, 99, 125, 253, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	17
LpnPI	CCDG	5 cut(s)	38, 138, 343, 346, 495
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	3 cut(s)	46, 86, 439
MaeI	CTAG	2 cut(s)	117, 207
MaeIII	GTNAC	1 cut(s)	497
MboII	GAAGA	3 cut(s)	95, 232, 303
MluCI	AATT	7 cut(s)	29, 77, 138, 174, 181, 302, 307
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	220, 265, 268, 375, 460
MseI	TTAA	3 cut(s)	141, 267, 519
MslI	CAYNNNNRTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	212
NheI	GCTAGC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	316, 350
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	4 cut(s)	293, 347, 480, 486
RsaNI	GTAC	4 cut(s)	292, 346, 479, 485
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	141, 267, 519
SatI	GCNGC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	28
SetI	ASST	4 cut(s)	115, 154, 212, 267
SfaNI	GCATC	3 cut(s)	46, 86, 439
SfcI	CTRYAG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	29, 77, 138, 174, 181, 302, 307
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	117, 207
TaaI	ACNGT	2 cut(s)	423, 497
TaqI	TCGA	3 cut(s)	94, 169, 314
TasI	AATT	7 cut(s)	29, 77, 138, 174, 181, 302, 307
TatI	WGTACW	2 cut(s)	291, 484
TfiI	GAWTC	2 cut(s)	316, 350
Tru1I	TTAA	3 cut(s)	141, 267, 519
Tru9I	TTAA	3 cut(s)	141, 267, 519
TscAI	CASTG	3 cut(s)	21, 31, 222
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	21, 31, 222
XapI	RAATTY	2 cut(s)	29, 174
XmiI	GTMKAC	2 cut(s)	5, 162
XspI	CTAG	2 cut(s)	117, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.