FvH4_4g08901

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004523
Physical Location & Seq
Forward (+)
9804930 .. 9805828
899 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08901.t1

Sequence Viewer

Length: 804 bp
ATGAGGTTTCCTGAATTTGTGCAGCATTATGATAAGCAAGTTGAAGCCACACGCTCAAGCGAATTAGAAGAGACTTTTCGCTGCAAAAATGGCGTACCATCTACTGCTAAGAGGAGTACGAAACTACTATTTCAAGCAGGTCAAGTTTATTCAAGAAAAGTTTATAATCTGTTTGAGACTGAGCTTACCGCTAGCATGGCATTCAAGGTGGATGAAGTTGATACTGATGGTACAAGACATACTTTTGAATTGAGTCAAGAGGGTCGCAATAGAATTTATGTTGTAAAGCTGAACTCTTCAGATAACACAGTCACATGTAGCTGCAAGATGTTTGAATCTATGGGATTGTTGTGTCGTCATGCTCTAAGGGTATTGAATGTGAGGAATGTTACTAAGATACCACCGCAATATATATTGAAGCGTTGGACAAAGGATGCAAAATCAGAAATTGGGGCACAAGAACATGAAGCATTATTGCAACAAAAGGATAAATCATCAGTTGTGTTGCGTCGAAATAATATGGTTCGAAAAGCATATGACATATTGAGCAAGGCTGCAATGACAGAGAAAGCTAGTAAAATAGCAATGGAAAAGTTGAAAGAGATGGAAGAGTTACTTGAAAAGGATGAGGTAGAGCCAAAAGGATCTGGTCAAGAAGATGAGGTAGAGACAAAAGGATCTGGTCACAAAGAAAGCAACGAGGCTTTCAATGATGATAATATTTCGGATGATAATGAAAGTGGTTGCGAAGTTGATGAGACACCAGTATTGGATCCGCCATGTGCAAAGACAAGGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

268

Amino Acids

30.42

Weight (kDa)

5.5

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 94 - 128 8.1e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 128
AciI CCGC 3 cut(s) 189, 404, 776
AclWI GGATC 4 cut(s) 652, 685, 767, 780
AcsI RAATTY 2 cut(s) 14, 273
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 3 cut(s) 96, 118, 232
AflIII ACRYGT 1 cut(s) 314
AluBI AGCT 4 cut(s) 184, 289, 321, 572
AluI AGCT 4 cut(s) 184, 289, 321, 572
Alw26I GTCTC 4 cut(s) 65, 170, 662, 752
AlwI GGATC 4 cut(s) 652, 685, 767, 780
ApeKI GCWGC 4 cut(s) 22, 81, 321, 554
ApoI RAATTY 2 cut(s) 14, 273
AsuII TTCGAA 1 cut(s) 526
AsuNHI GCTAGC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 457
BamHI GGATCC 1 cut(s) 772
BbvI GCAGC 4 cut(s) 34, 68, 308, 541
BccI CCATC 3 cut(s) 106, 221, 598
BcoDI GTCTC 4 cut(s) 65, 170, 662, 752
BfaI CTAG 2 cut(s) 192, 573
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 4 cut(s) 23, 82, 322, 555
BlsI GCNGC 4 cut(s) 24, 83, 323, 556
BmiI GGNNCC 1 cut(s) 774
BmsI GCATC 1 cut(s) 424
BmtI GCTAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 764
Bse3DI GCAATG 2 cut(s) 564, 591
BseGI GGATG 5 cut(s) 217, 439, 631, 733, 802
BseMI GCAATG 2 cut(s) 564, 591
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 764
BseRI GAGGAG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 4 cut(s) 34, 68, 308, 541
BsgI GTGCAG 1 cut(s) 41
BsmAI GTCTC 4 cut(s) 65, 170, 662, 752
BsmI GAATGC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 3 cut(s) 644, 677, 772
BspACI CCGC 3 cut(s) 189, 404, 776
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 128
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 4 cut(s) 652, 685, 767, 780
BspT104I TTCGAA 1 cut(s) 526
BsrDI GCAATG 2 cut(s) 564, 591
BsrI ACTGG 1 cut(s) 764
BssMI GATC 3 cut(s) 644, 677, 772
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 3 cut(s) 63, 301, 603
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 4 cut(s) 108, 180, 365, 393
BstF5I GGATG 5 cut(s) 217, 439, 631, 733, 802
BstKTI GATC 3 cut(s) 647, 680, 775
BstMAI GTCTC 4 cut(s) 65, 170, 662, 752
BstMBI GATC 3 cut(s) 644, 677, 772
BstMWI GCNNNNNNNGC 2 cut(s) 90, 197
BstNSI RCATGY 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 4 cut(s) 34, 68, 308, 541
BstX2I RGATCY 3 cut(s) 644, 677, 772
BstYI RGATCY 3 cut(s) 644, 677, 772
BtsCI GGATG 5 cut(s) 217, 439, 631, 733, 802
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 193
CseI GACGC 1 cut(s) 497
Csp6I GTAC 3 cut(s) 95, 117, 231
CviAII CATG 5 cut(s) 196, 315, 359, 464, 780
CviJI RGCY 8 cut(s) 47, 184, 289, 321, 554, 572, 637, 704
CviKI_1 RGCY 8 cut(s) 47, 184, 289, 321, 554, 572, 637, 704
CviQI GTAC 3 cut(s) 95, 117, 231
DdeI CTNAG 4 cut(s) 108, 180, 365, 393
DpnI GATC 3 cut(s) 646, 679, 774
DpnII GATC 3 cut(s) 644, 677, 772
Eam1104I CTCTTC 3 cut(s) 63, 301, 603
EarI CTCTTC 3 cut(s) 63, 301, 603
EciI GGCGGA 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 282
FaeI CATG 5 cut(s) 199, 318, 362, 467, 783
FalI AAGNNNNNCTT 4 cut(s) 226, 258, 600, 632
FatI CATG 5 cut(s) 195, 314, 358, 463, 779
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 23, 82, 322, 555
FokI GGATG 4 cut(s) 224, 446, 638, 740
Fsp4HI GCNGC 4 cut(s) 23, 82, 322, 555
FspBI CTAG 2 cut(s) 192, 573
GluI GCNGC 4 cut(s) 23, 82, 322, 555
HgaI GACGC 1 cut(s) 497
Hin1II CATG 5 cut(s) 199, 318, 362, 467, 783
HinfI GANTC 2 cut(s) 253, 335
Hpy188I TCNGA 3 cut(s) 301, 445, 727
Hpy188III TCNNGA 4 cut(s) 11, 153, 257, 653
Hpy99I CGWCG 1 cut(s) 513
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 7 cut(s) 22, 84, 324, 437, 478, 557, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 197
HpyF3I CTNAG 4 cut(s) 108, 180, 365, 393
Hsp92II CATG 5 cut(s) 199, 318, 362, 467, 783
Kzo9I GATC 3 cut(s) 644, 677, 772
LpnPI CCDG 5 cut(s) 24, 123, 633, 666, 777
Lsp1109I GCAGC 4 cut(s) 34, 68, 308, 541
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 192, 573
MaeIII GTNAC 4 cut(s) 310, 388, 612, 683
MalI GATC 3 cut(s) 646, 679, 774
MboI GATC 3 cut(s) 644, 677, 772
MboII GAAGA 4 cut(s) 80, 288, 620, 668
MflI RGATCY 3 cut(s) 644, 677, 772
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 5 cut(s) 14, 62, 248, 273, 447
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 6 cut(s) 105, 253, 375, 622, 655, 694
Mva1269I GAATGC 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 90, 197
NdeI CATATG 1 cut(s) 535
NdeII GATC 3 cut(s) 644, 677, 772
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 5 cut(s) 199, 318, 362, 467, 783
NlaIV GGNNCC 1 cut(s) 774
NmuCI GTSAC 2 cut(s) 310, 683
NspI RCATGY 1 cut(s) 318
NspV TTCGAA 1 cut(s) 526
PciI ACATGT 1 cut(s) 314
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 4 cut(s) 24, 83, 323, 556
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PscI ACATGT 1 cut(s) 314
PsiI TTATAA 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 774
PsuI RGATCY 3 cut(s) 644, 677, 772
RsaI GTAC 3 cut(s) 96, 118, 232
RsaNI GTAC 3 cut(s) 95, 117, 231
SatI GCNGC 4 cut(s) 23, 82, 322, 555
Sau3AI GATC 3 cut(s) 644, 677, 772
SchI GAGTC 1 cut(s) 262
SduI GDGCHC 1 cut(s) 457
SetI ASST 9 cut(s) 8, 142, 186, 210, 291, 323, 574, 633, 666
SfaNI GCATC 1 cut(s) 424
SfuI TTCGAA 1 cut(s) 526
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 5 cut(s) 14, 62, 248, 273, 447
SsiI CCGC 3 cut(s) 189, 404, 776
SspI AATATT 1 cut(s) 721
SspMI CTAG 2 cut(s) 192, 573
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 2 cut(s) 511, 526
TasI AATT 5 cut(s) 14, 62, 248, 273, 447
TfiI GAWTC 1 cut(s) 335
TseFI GTSAC 2 cut(s) 310, 683
TseI GCWGC 4 cut(s) 22, 81, 321, 554
Tsp45I GTSAC 2 cut(s) 310, 683
TspDTI ATGAA 3 cut(s) 228, 480, 750
XapI RAATTY 2 cut(s) 14, 273
XceI RCATGY 1 cut(s) 318
XspI CTAG 2 cut(s) 192, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.