Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

1089090 .. 1090099

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGTAACCTCATGTACCATAAGGTTCAAGTTAAGCTTTCGATTTTTGTTTCAGGGTTTATGAGGAAGATTGTCAGCAATTTTCTGGGGCTGATCCGTATACTCCGAGGGAGAAAAGAAACGATGGTGTGTTCAATTGATGAGGAGCTAAACTTTAGCGACGCTGACAACAAGAAATCACATAATGAATCATCTAGCACTTTTATTCCGGAACTGCAAATAGCTACTAAGGCAGATGAATCTGAAGCTGCTGAAAAACCTTTGATTCAACCCCTAGTCGAACCATATTACATCTCTTGTAAGTTCTGTTTTACAAGCGATCATTCAAGTAAAGGTTGCCCTATGAAACAATATGTATGTCGAGAGTGTGGTACGCTATTTCCCTGCGAGAAGAAGGACGTCCATGGCGAAGAACATAAAAGACTAAATTATTGCTTGGGTTGTAAACGTTGGGGCCATACGCGTAACATGTGCTCTGATAAGGATAATTTGGATGTAAACTGGGGAGAAATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.77

Weight (kDa)

7.53

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	517
AatII	GACGTC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	100
AccII	CGCG	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	208
AclI	AACGTT	1 cut(s)	448
AclWI	GGATC	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	17, 373
AflIII	ACRYGT	2 cut(s)	461, 468
AgsI	TTSAA	4 cut(s)	29, 135, 269, 327
AluBI	AGCT	4 cut(s)	37, 148, 224, 248
AluI	AGCT	4 cut(s)	37, 148, 224, 248
Alw21I	GWGCWC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	195, 275
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	455
BmrI	ACTGGG	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	106, 403
BsaWI	WCCGGW	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	506
BseAI	TCCGGA	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	106, 403
BseGI	GGATG	1 cut(s)	499
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	209
BsnI	GGCC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	93, 319
Bsp19I	CCATGG	1 cut(s)	403
BspANI	GGCC	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	106, 403
BssMI	GATC	2 cut(s)	93, 319
BssNAI	GTATAC	1 cut(s)	101
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	403
Bst1107I	GTATAC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	96, 322
BstMBI	GATC	2 cut(s)	93, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	472
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	16, 372
CviAII	CATG	3 cut(s)	13, 404, 469
CviJI	RGCY	6 cut(s)	37, 91, 148, 224, 248, 456
CviKI_1	RGCY	6 cut(s)	37, 91, 148, 224, 248, 456
CviQI	GTAC	2 cut(s)	16, 372
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	95, 321
DpnII	GATC	2 cut(s)	93, 319
Eco130I	CCWWGG	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	16, 407, 472
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	3 cut(s)	12, 403, 468
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	195, 275
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	16, 407, 472
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	188, 239, 265
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	101, 446, 499
Hpy188I	TCNGA	3 cut(s)	107, 244, 478
Hpy188III	TCNNGA	2 cut(s)	209, 362
Hpy8I	GTNNAC	3 cut(s)	101, 446, 499
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	399, 448
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	399, 448
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	16, 407, 472
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	93, 319
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	39, 71, 222, 397, 487
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	195, 275
MaeII	ACGT	2 cut(s)	399, 448
MaeIII	GTNAC	2 cut(s)	5, 464
MalI	GATC	2 cut(s)	95, 321
MboI	GATC	2 cut(s)	93, 319
MboII	GAAGA	3 cut(s)	79, 403, 422
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	4 cut(s)	79, 135, 427, 487
MluI	ACGCGT	1 cut(s)	461
MnlI	CCTC	4 cut(s)	20, 57, 101, 136
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	1 cut(s)	33
MspI	CCGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	2 cut(s)	93, 319
NlaIII	CATG	3 cut(s)	16, 407, 472
NlaIV	GGNNCC	1 cut(s)	455
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	188, 239, 265
PkrI	GCNGC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	517
Psp1406I	AACGTT	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	454
RsaI	GTAC	2 cut(s)	17, 373
RsaNI	GTAC	2 cut(s)	16, 372
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	93, 319
Sau96I	GGNCC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	476
Sse9I	AATT	4 cut(s)	79, 135, 427, 487
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	195, 275
StyI	CCWWGG	1 cut(s)	403
TaiI	ACGT	2 cut(s)	402, 451
TaqI	TCGA	3 cut(s)	41, 279, 361
TasI	AATT	4 cut(s)	79, 135, 427, 487
TfiI	GAWTC	3 cut(s)	188, 239, 265
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	201, 252, 359
TspGWI	ACGGA	1 cut(s)	86
XceI	RCATGY	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	100
XspI	CTAG	2 cut(s)	195, 275
ZraI	GACGTC	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.