Rh5DG027800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001758
Physical Location & Seq
Forward (+)
1993211 .. 1993818
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG027800.1

Sequence Viewer

Length: 351 bp
ATGTGCCCCAATAAACCGAAGAGAGGTTTAATGTTTTGTACCGTTTGCCGCCACATCTATCCCAAATTCTGTAAAAAACCGGAAGAGCACGGCAACAAAGCAGAGGACTATATTTTCTGTCGACATTGTTATACAATTGGTGACCATGAAACTGCAATGTGCCCCAATAAACCGAAGAAACGTGTAATGGTTTGCAGCGTTTGCAGCGACCTCTATCCGTGTAAAAATCAGGAAGAGCATGGCAACAAAGGAGTTGAAGTAAACAATTTTTGTTCTCAATGTAGTAAGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGAGTATGATCCAACTTTAACCTTGAACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.38

Weight (kDa)

7.93

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 121
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 257, 343
Alw21I GWGCWC 2 cut(s) 90, 314
Alw44I GTGCAC 1 cut(s) 310
AlwI GGATC 1 cut(s) 320
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 195, 204
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 152
BaeGI GKGCMC 3 cut(s) 8, 164, 314
Bbv12I GWGCWC 2 cut(s) 90, 314
BbvI GCAGC 2 cut(s) 207, 216
BceAI ACGGC 1 cut(s) 106
BisI GCNGC 3 cut(s) 49, 196, 205
BlsI GCNGC 3 cut(s) 50, 197, 206
BmgT120I GGNCC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 3 cut(s) 8, 164, 314
BseXI GCAGC 2 cut(s) 207, 216
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 90, 314
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 4 cut(s) 8, 90, 164, 314
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 2 cut(s) 78, 228
BsrDI GCAATG 1 cut(s) 162
BssMI GATC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 3 cut(s) 14, 78, 228
BstAPI GCANNNNNTGC 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 140
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 201, 204
BstPI GGTNACC 1 cut(s) 140
BstSLI GKGCMC 3 cut(s) 8, 164, 314
BstV1I GCAGC 2 cut(s) 207, 216
BsuRI GGCC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 39
CviAII CATG 2 cut(s) 146, 239
CviJI RGCY 1 cut(s) 294
CviKI_1 RGCY 1 cut(s) 294
CviQI GTAC 1 cut(s) 39
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 14, 78, 228
EarI CTCTTC 3 cut(s) 14, 78, 228
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
FaeI CATG 2 cut(s) 149, 242
FaiI YATR 5 cut(s) 111, 132, 147, 240, 324
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 145, 238
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 49, 196, 205
Fsp4HI GCNGC 3 cut(s) 49, 196, 205
GluI GCNGC 3 cut(s) 49, 196, 205
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 80
Hin1II CATG 2 cut(s) 149, 242
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 122, 262, 312
Hpy188III TCNNGA 2 cut(s) 230, 305
Hpy8I GTNNAC 3 cut(s) 122, 262, 312
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 4 cut(s) 155, 195, 204, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 204
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 149, 242
Kzo9I GATC 1 cut(s) 325
LguI GCTCTTC 2 cut(s) 78, 228
LpnPI CCDG 2 cut(s) 93, 215
Lsp1109I GCAGC 2 cut(s) 207, 216
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 4 cut(s) 31, 95, 187, 245
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 4 cut(s) 8, 90, 164, 314
MluCI AATT 3 cut(s) 65, 135, 265
MnlI CCTC 5 cut(s) 17, 97, 221, 310, 312
MseI TTAA 2 cut(s) 29, 335
MspI CCGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 201, 204
NdeII GATC 1 cut(s) 325
NlaIII CATG 2 cut(s) 149, 242
NmuCI GTSAC 1 cut(s) 140
PciSI GCTCTTC 2 cut(s) 78, 228
PkrI GCNGC 3 cut(s) 50, 197, 206
PspEI GGTNACC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 78, 228
SaqAI TTAA 2 cut(s) 29, 335
SatI GCNGC 3 cut(s) 49, 196, 205
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 292
SduI GDGCHC 4 cut(s) 8, 90, 164, 314
SetI ASST 4 cut(s) 28, 184, 213, 341
SgeI CNNG 9 cut(s) 92, 101, 158, 194, 231, 242, 251, 310, 317
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 3 cut(s) 65, 135, 265
SsiI CCGC 1 cut(s) 49
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 121
TasI AATT 3 cut(s) 65, 135, 265
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 29, 335
Tru9I TTAA 2 cut(s) 29, 335
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 195, 204
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 207
VneI GTGCAC 1 cut(s) 310
XapI RAATTY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.