Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Forward (+)

93559294 .. 93560065

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGTACTATCAGGAACATTGTCCGCAACCTCATGCGCCATAAGGGTCTTGGTAAGCTTTCGATTTTTGTTTTAGGGTTCGTGAGAAAGATTATCAGCAATTTTCTGGAGCTGATCCGTTTGTTCCGAAGGAAAAAAGCTATGGAACTGCAAAGAGGTACCAAGGCAGAAGAACCCGAAGCTGCTGGAAACCCTTTGATTCAACCTGTAGTCAAAAGAGAACACATTTTCTGTCGGTACTGTTTTAGCGTTGGAGATCATAAAACTTCAGTTTGCCCGAAGAAACATTACATATGTACAGACTGTGGTACCCTATTTCCCTGCGAGAAGAAGGACGTCCATGGCGAAGAACATAAAGTATTAAATTATTGCTATGGTTGTAAAAGATGGGGCCACTTGTTTGAAATGTGCCCTGACCTTGATAAATTGGATGTAAACTTTGACCCTCTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.57

Weight (kDa)

9.09

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
Acc65I	GGTACC	2 cut(s)	158, 308
AccB1I	GGYRCC	2 cut(s)	158, 308
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	5 cut(s)	7, 160, 239, 298, 310
AgsI	TTSAA	2 cut(s)	203, 404
AluBI	AGCT	4 cut(s)	58, 112, 140, 182
AluI	AGCT	4 cut(s)	58, 112, 140, 182
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	182
Asp718I	GGTACC	2 cut(s)	158, 308
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BanI	GGYRCC	2 cut(s)	158, 308
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	3 cut(s)	160, 310, 392
BpmI	CTGGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	162, 340
BseDI	CCNNGG	2 cut(s)	162, 340
BseGI	GGATG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	2 cut(s)	158, 308
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	114, 256
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	160, 310, 392
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	2 cut(s)	158, 308
BsrGI	TGTACA	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	162, 340
BssMI	GATC	2 cut(s)	114, 256
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	162, 340
Bst4CI	ACNGT	2 cut(s)	242, 305
BstACI	GRCGYC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	117, 259
BstMBI	GATC	2 cut(s)	114, 256
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	436
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	5 cut(s)	6, 159, 238, 297, 309
CviAII	CATG	2 cut(s)	34, 341
CviJI	RGCY	5 cut(s)	58, 112, 140, 182, 393
CviKI_1	RGCY	5 cut(s)	58, 112, 140, 182, 393
CviQI	GTAC	5 cut(s)	6, 159, 238, 297, 309
DpnI	GATC	2 cut(s)	116, 258
DpnII	GATC	2 cut(s)	114, 256
Eco130I	CCWWGG	2 cut(s)	162, 340
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	162, 340
ErhI	CCWWGG	2 cut(s)	162, 340
FaeI	CATG	2 cut(s)	37, 344
FaiI	YATR	9 cut(s)	35, 42, 143, 261, 293, 295, 342, 354, 375
FatI	CATG	2 cut(s)	33, 340
FauNDI	CATATG	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	37, 344
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	4 cut(s)	13, 82, 107, 449
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	2 cut(s)	123, 325
HpyCH4III	ACNGT	2 cut(s)	242, 305
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	37, 344
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	2 cut(s)	162, 312
Kzo9I	GATC	2 cut(s)	114, 256
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	92, 171, 219, 334, 426
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	336
MalI	GATC	2 cut(s)	116, 258
MboI	GATC	2 cut(s)	114, 256
MboII	GAAGA	4 cut(s)	182, 292, 340, 359
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	3 cut(s)	100, 364, 425
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	41, 149, 456
MseI	TTAA	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	340
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	2 cut(s)	114, 256
NlaIII	CATG	2 cut(s)	37, 344
NlaIV	GGNNCC	3 cut(s)	160, 310, 392
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	160, 310, 392
PspPI	GGNCC	1 cut(s)	391
RsaI	GTAC	5 cut(s)	7, 160, 239, 298, 310
RsaNI	GTAC	5 cut(s)	6, 159, 238, 297, 309
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	114, 256
Sau96I	GGNCC	1 cut(s)	391
ScaI	AGTACT	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	9 cut(s)	33, 60, 114, 142, 160, 184, 208, 339, 420
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	100, 364, 425
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	449
StyI	CCWWGG	2 cut(s)	162, 340
TaaI	ACNGT	2 cut(s)	242, 305
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	100, 364, 425
TatI	WGTACW	2 cut(s)	5, 296
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseI	GCWGC	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	107
XbaI	TCTAGA	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	337
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.