Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

93875177 .. 93878716

Gene Structure 3540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTACTATCAGGAACATTGTCCGCAACCTCATGCGCCATAAGGGTCTTGGTAAGCTTTCGATTTTTGTTTCAGGGTTCGTGAGAAACATTATCAGCAATTTTCTGGGGCTGATCCGTTTGTTCCGAAGGAAAAAAGCTATGGAACTGCAAAGAGGTACCAAGGCAGAAGAACCCGAAGCTGCTGGAAACCCTTTGATTCAACCTGTAGTCAAAAGAGAACACATTTTCTGTCGGTACTGTTTTAGCGTTGGAGATCATAAAACTTCAGTTTGCCCGAAGAAACATTACATATGTACAGACTGTGGTACCCTATTTCCCTGCGAGAAGAAGGACGTCCATGGCGAAGAACATAAAGTTTTGCGAGCAGTGCGGCAGTGCTTGTTGGCTCCGATCTGCAACAGGTGCTCCGCGCTGCAAGAGGTACGAGGACAAGGCTTCATCTCCGTCGTGCGTAGCGGAGGCTACTTTGGCCGGTCGGAAGAGGCGAAGTACGGACTTTGTTGTGGGTTTGCAAACGAGACCGACGTTTGCTTTGGTGGCATCGGGCTTGATGAGAAGGAGATCGGCGTCATGGTTTCGGGACCGGAGGAGGAGCGAGGTCGGAGATTTCTGCTAGAGATCTGCGCTCGGATCGCCACCGAGGCTTGTGAGAGGAGACAACGTGTGTCGGACAACAATGATCCCTTTATCCCTTTCCTTAGTCCAAGGCTCCAAGCTCATAAGTGGAGTCCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.72

Weight (kDa)

9.18

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
Acc65I	GGTACC	2 cut(s)	158, 308
AccB1I	GGYRCC	2 cut(s)	158, 308
AccII	CGCG	1 cut(s)	413
AciI	CCGC	4 cut(s)	25, 373, 411, 459
AclWI	GGATC	3 cut(s)	109, 641, 677
AcoI	YGGCCR	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	2 cut(s)	336, 570
AfaI	GTAC	7 cut(s)	7, 160, 239, 298, 310, 426, 494
AflIII	ACRYGT	1 cut(s)	664
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	4 cut(s)	58, 140, 182, 719
AluI	AGCT	4 cut(s)	58, 140, 182, 719
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	2 cut(s)	515, 652
AlwI	GGATC	3 cut(s)	109, 641, 677
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	182, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp718I	GGTACC	2 cut(s)	158, 308
AspLEI	GCGC	3 cut(s)	39, 415, 629
AspS9I	GGNCC	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BanI	GGYRCC	2 cut(s)	158, 308
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	169, 402
BcoDI	GTCTC	2 cut(s)	515, 652
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	621
BisI	GCNGC	3 cut(s)	183, 374, 416
BlsI	GCNGC	3 cut(s)	184, 375, 417
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	5 cut(s)	160, 310, 390, 585, 713
BmsI	GCATC	1 cut(s)	552
BsaHI	GRCGYC	2 cut(s)	336, 570
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	4 cut(s)	162, 340, 642, 707
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 649, 679
Bse118I	RCCGGY	1 cut(s)	474
BseDI	CCNNGG	4 cut(s)	162, 340, 642, 707
BseRI	GAGGAG	3 cut(s)	605, 608, 670
BseXI	GCAGC	2 cut(s)	169, 402
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	2 cut(s)	158, 308
BsiEI	CGRYCG	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	475, 587
BslFI	GGGAC	1 cut(s)	597
BsmAI	GTCTC	2 cut(s)	515, 652
BsmFI	GGGAC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	296
Bsp143I	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	4 cut(s)	25, 373, 411, 459
BspANI	GGCC	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	5 cut(s)	160, 310, 390, 585, 713
BspPI	GGATC	3 cut(s)	109, 641, 677
BspT107I	GGYRCC	2 cut(s)	158, 308
BspTNI	GGTCTC	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	4 cut(s)	162, 340, 642, 707
BssMI	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
BssNI	GRCGYC	2 cut(s)	336, 570
BssT1I	CCWWGG	3 cut(s)	162, 340, 707
Bst4CI	ACNGT	2 cut(s)	242, 305
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	2 cut(s)	336, 570
BstAPI	GCANNNNNTGC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	701
BstDSI	CCRYGG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	3 cut(s)	39, 415, 629
BstKTI	GATC	7 cut(s)	117, 259, 396, 567, 624, 636, 685
BstMAI	GTCTC	2 cut(s)	515, 652
BstMBI	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
BstMCI	CGRYCG	1 cut(s)	479
BstMWI	GCNNNNNNNGC	6 cut(s)	370, 405, 471, 540, 635, 644
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	169, 402
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	340
BtsI	GCAGTG	2 cut(s)	375, 383
BtsIMutI	CAGTG	2 cut(s)	375, 383
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	3 cut(s)	39, 415, 629
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	7 cut(s)	6, 159, 238, 297, 309, 425, 493
CviAII	CATG	3 cut(s)	34, 341, 574
CviQI	GTAC	7 cut(s)	6, 159, 238, 297, 309, 425, 493
DdeI	CTNAG	1 cut(s)	701
DpnI	GATC	7 cut(s)	116, 258, 395, 566, 623, 635, 684
DpnII	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	3 cut(s)	162, 340, 707
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	162, 340, 707
ErhI	CCWWGG	3 cut(s)	162, 340, 707
FaeI	CATG	3 cut(s)	37, 344, 577
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	3 cut(s)	33, 340, 573
FauNDI	CATATG	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	183, 374, 416
Fsp4HI	GCNGC	3 cut(s)	183, 374, 416
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	3 cut(s)	38, 414, 628
GluI	GCNGC	3 cut(s)	183, 374, 416
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	2 cut(s)	475, 587
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	3 cut(s)	39, 415, 629
Hin1I	GRCGYC	2 cut(s)	336, 570
Hin1II	CATG	3 cut(s)	37, 344, 577
Hin6I	GCGC	3 cut(s)	37, 413, 627
HinP1I	GCGC	3 cut(s)	37, 413, 627
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	199, 730
HpaII	CCGG	2 cut(s)	475, 587
Hpy188I	TCNGA	6 cut(s)	128, 393, 481, 606, 633, 673
Hpy188III	TCNNGA	3 cut(s)	13, 82, 582
Hpy99I	CGWCG	2 cut(s)	452, 530
HpyAV	CCTTC	3 cut(s)	123, 325, 553
HpyCH4III	ACNGT	2 cut(s)	242, 305
HpyCH4IV	ACGT	3 cut(s)	336, 528, 664
HpyCH4V	TGCA	4 cut(s)	151, 399, 418, 515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	370, 405, 471, 540, 635, 644
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	3 cut(s)	336, 528, 664
Hsp92I	GRCGYC	2 cut(s)	336, 570
Hsp92II	CATG	3 cut(s)	37, 344, 577
HspAI	GCGC	3 cut(s)	37, 413, 627
KpnI	GGTACC	2 cut(s)	162, 312
Kzo9I	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
LmnI	GCTCC	4 cut(s)	394, 413, 595, 717
LpnPI	CCDG	8 cut(s)	60, 92, 171, 219, 334, 388, 488, 600
Lsp1109I	GCAGC	2 cut(s)	169, 402
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	3 cut(s)	336, 528, 664
MalI	GATC	7 cut(s)	116, 258, 395, 566, 623, 635, 684
MboI	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
MboII	GAAGA	5 cut(s)	182, 292, 340, 359, 494
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	4 cut(s)	232, 459, 584, 651
MspI	CCGG	2 cut(s)	475, 587
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	6 cut(s)	370, 405, 471, 540, 635, 644
NcoI	CCATGG	1 cut(s)	340
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
NlaIII	CATG	3 cut(s)	37, 344, 577
NlaIV	GGNNCC	5 cut(s)	160, 310, 390, 585, 713
PcsI	WCGNNNNNNNCGW	3 cut(s)	342, 485, 525
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	184, 375, 417
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
PspN4I	GGNNCC	5 cut(s)	160, 310, 390, 585, 713
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	621
RsaI	GTAC	7 cut(s)	7, 160, 239, 298, 310, 426, 494
RsaNI	GTAC	7 cut(s)	6, 159, 238, 297, 309, 425, 493
SatI	GCNGC	3 cut(s)	183, 374, 416
Sau3AI	GATC	7 cut(s)	114, 256, 393, 564, 621, 633, 682
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	739
SduI	GDGCHC	1 cut(s)	410
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	584
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	4 cut(s)	25, 373, 411, 459
SspMI	CTAG	1 cut(s)	617
StyI	CCWWGG	3 cut(s)	162, 340, 707
TaaI	ACNGT	2 cut(s)	242, 305
TaiI	ACGT	3 cut(s)	339, 531, 667
TaqI	TCGA	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	1 cut(s)	100
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	2 cut(s)	375, 383
TseI	GCWGC	2 cut(s)	182, 415
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	3 cut(s)	107, 436, 510
TspRI	CASTG	2 cut(s)	375, 383
VpaK11BI	GGWCC	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	617
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.