Rh5AG027200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001758
Physical Location & Seq
Forward (+)
1857190 .. 1874142
16953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG027200.1

Sequence Viewer

Length: 345 bp
ATGATGACCTCACGTATCCCCAAGATTATCCGCAATCTCCGGCACCCCAAGGCTCCCAGTGAACTTTGGACTTTTATTTCAGGGGTCGTGAGGAAGATTATCTCCAAATTCCATGGGGTTCTCCTTGTGTTCAGACGAAGAAAAGCCACAGTTGCCATGAGTACCAATCCAGTTGACGAGGACCTGAACCTTGGACTCCTCCATGAAGCTGACCAGAAGGAAGAACAGTATGAAGCATCTATCTCTCCTATTCGCGCGGCAGATGGTGTGGGGCTAATGGCGGCTGGTCTGTGGTCGGAGTGCCACCGGACGAGTGGTGTATTTTCCGCCCCGCCTCGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

9.89

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 2 cut(s) 255, 257
AciI CCGC 5 cut(s) 31, 257, 281, 327, 332
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 336
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 42
BccI CCATC 1 cut(s) 257
BciVI GTATCC 1 cut(s) 26
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 2 cut(s) 258, 282
BlsI GCNGC 2 cut(s) 259, 283
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 44, 54
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 48, 112, 190, 335
BsaWI WCCGGW 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 57, 170
BseDI CCNNGG 4 cut(s) 48, 112, 190, 335
BseLI CCNNNNNNNGG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 57, 170
BseRI GAGGAG 1 cut(s) 188
Bsh1236I CGCG 2 cut(s) 255, 257
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 40, 307
BslI CCNNNNNNNGG 1 cut(s) 336
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 5 cut(s) 31, 257, 281, 327, 332
BspFNI CGCG 2 cut(s) 255, 257
BspLI GGNNCC 2 cut(s) 44, 54
BspT107I GGYRCC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 57, 170
BssECI CCNNGG 4 cut(s) 48, 112, 190, 335
BssT1I CCWWGG 3 cut(s) 48, 112, 190
Bst4CI ACNGT 2 cut(s) 151, 228
BstBAI YACGTR 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 2 cut(s) 255, 257
BstHHI GCGC 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstUI CGCG 2 cut(s) 255, 257
BsuI GTATCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 162
CviAII CATG 3 cut(s) 113, 157, 203
CviJI RGCY 5 cut(s) 53, 146, 209, 274, 284
CviKI_1 RGCY 5 cut(s) 53, 146, 209, 274, 284
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 342
EciI GGCGGA 1 cut(s) 316
Eco130I CCWWGG 3 cut(s) 48, 112, 190
Eco47I GGWCC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 48, 112, 190
ErhI CCWWGG 3 cut(s) 48, 112, 190
FaeI CATG 3 cut(s) 116, 160, 206
FaiI YATR 4 cut(s) 114, 158, 204, 231
FatI CATG 3 cut(s) 112, 156, 202
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 258, 282
Fsp4HI GCNGC 2 cut(s) 258, 282
GlaI GCGC 1 cut(s) 256
GluI GCNGC 2 cut(s) 258, 282
HapII CCGG 2 cut(s) 40, 307
HhaI GCGC 1 cut(s) 257
Hin1II CATG 3 cut(s) 116, 160, 206
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 195
HpaII CCGG 2 cut(s) 40, 307
Hpy166II GTNNAC 2 cut(s) 62, 175
Hpy188I TCNGA 2 cut(s) 134, 298
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 62, 175
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 151, 228
HpyCH4IV ACGT 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 116, 160, 206
HspAI GCGC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 8 cut(s) 53, 66, 70, 183, 197, 227, 270, 320
LweI GCATC 1 cut(s) 245
MaeII ACGT 1 cut(s) 13
MboII GAAGA 3 cut(s) 106, 150, 233
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 5 cut(s) 19, 84, 172, 209, 345
MspI CCGG 2 cut(s) 40, 307
MvnI CGCG 2 cut(s) 255, 257
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 112
NlaIII CATG 3 cut(s) 116, 160, 206
NlaIV GGNNCC 2 cut(s) 44, 54
PkrI GCNGC 2 cut(s) 259, 283
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Ppu21I YACGTR 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 44, 54
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 2 cut(s) 258, 282
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 189
SetI ASST 5 cut(s) 11, 16, 186, 192, 211
SfaNI GCATC 1 cut(s) 245
SinI GGWCC 1 cut(s) 181
Sse9I AATT 1 cut(s) 107
SsiI CCGC 5 cut(s) 31, 257, 281, 327, 332
StyI CCWWGG 3 cut(s) 48, 112, 190
TaaI ACNGT 2 cut(s) 151, 228
TaiI ACGT 1 cut(s) 16
TaqII GACCGA 1 cut(s) 327
TasI AATT 1 cut(s) 107
TauI GCSGC 2 cut(s) 260, 284
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 219, 246
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.