Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

93758903 .. 93760340

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTAGTTTCTGCGAGATTATCTGCAACCTCCGGAACCCCAAGGCTCCCAGTAAACTTTCGACTTTTATTTCAGGGTTCGTGAGGAAGATTATCTCCAAATTCCATGGGGCTCTCCTTGTGTTCAGACGAAGAAAAGCCACGGTTCCCATGAGTACCAATCCAGTTGACGAGGACCTGAACCTTGGACTCCTCCATGAAGCTGACCACAAAGAAGAACAGTATGAAGCATCTACATCTCCTATTCATATTGACATGAAGGGTGATTTTCTTTTTCTTTTGTATTCAGCAATGGAGCAGCAAAAAGGTACCAAGGCAGAAGTAACTCCAATCTGCCCTGATACACCTGCACTTGTGGTAGAACAAGTCAAAAAAGATGACTATGTTTTTTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCAATAAACCGAAAAGAGGTTTAATGTTTTGTACCGTTTGCCGCCACATCTATCCCAAATTCTGTAAAAAACCGGAAGAGCACGGCAACAAAGCAGAGGACTATATTTTCTGTCGACATTGTTATACAATTGGTGACCATGAAACTGCAATGTGCCCCAATAAACCGAAGAAACGTGTACTGGTTTGCAGCGTTTGCAGCGACCTCTATCCATGTAAAAATCAGGAAGAGCATGGCAACAAAGGAGTTGAAGTAAACAATTTTTGTTCTCAATGTAGTAAGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGAGTATGATCCAACTTTAACCTTGAACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.43

Weight (kDa)

7.81

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	550
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	1 cut(s)	478
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	2 cut(s)	101, 494
AfaI	GTAC	4 cut(s)	157, 310, 469, 615
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	2 cut(s)	686, 772
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	2 cut(s)	519, 743
Alw44I	GTGCAC	1 cut(s)	739
AlwI	GGATC	1 cut(s)	749
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	1 cut(s)	721
ApaLI	GTGCAC	1 cut(s)	739
ApeKI	GCWGC	3 cut(s)	298, 624, 633
ApoI	RAATTY	2 cut(s)	101, 494
Asp718I	GGTACC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	175, 721
AsuHPI	GGTGA	3 cut(s)	275, 425, 581
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	3 cut(s)	437, 593, 743
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	519, 743
BbvI	GCAGC	3 cut(s)	310, 636, 645
BceAI	ACGGC	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	299, 478, 625, 634
BlsI	GCNGC	4 cut(s)	300, 479, 626, 635
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	175, 721
BmiI	GGNNCC	4 cut(s)	38, 48, 147, 310
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	717
BsaJI	CCNNGG	5 cut(s)	42, 106, 141, 184, 312
BsaWI	WCCGGW	2 cut(s)	33, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	51, 164, 621
Bse3DI	GCAATG	3 cut(s)	297, 435, 591
BseAI	TCCGGA	1 cut(s)	33
BseDI	CCNNGG	5 cut(s)	42, 106, 141, 184, 312
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	3 cut(s)	297, 435, 591
BseNI	ACTGG	3 cut(s)	51, 164, 621
BseRI	GAGGAG	2 cut(s)	182, 761
BseSI	GKGCMC	3 cut(s)	437, 593, 743
BseXI	GCAGC	3 cut(s)	310, 636, 645
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	723
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	519, 743
BsiSI	CCGG	2 cut(s)	34, 509
BslI	CCNNNNNNNGG	1 cut(s)	452
BsnI	GGCC	1 cut(s)	723
Bsp1286I	GDGCHC	5 cut(s)	115, 437, 519, 593, 743
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	408, 754
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	1 cut(s)	723
BspEI	TCCGGA	1 cut(s)	33
BspLI	GGNNCC	4 cut(s)	38, 48, 147, 310
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	749
BspQI	GCTCTTC	2 cut(s)	507, 657
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	3 cut(s)	297, 435, 591
BsrI	ACTGG	3 cut(s)	51, 164, 621
BssECI	CCNNGG	5 cut(s)	42, 106, 141, 184, 312
BssMI	GATC	2 cut(s)	408, 754
BssT1I	CCWWGG	4 cut(s)	42, 106, 184, 312
Bst4CI	ACNGT	3 cut(s)	145, 222, 472
Bst6I	CTCTTC	2 cut(s)	507, 657
BstAPI	GCANNNNNTGC	1 cut(s)	630
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	2 cut(s)	106, 141
BstEII	GGTNACC	2 cut(s)	413, 569
BstKTI	GATC	2 cut(s)	411, 757
BstMBI	GATC	2 cut(s)	408, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	630, 633
BstPI	GGTNACC	2 cut(s)	413, 569
BstSLI	GKGCMC	3 cut(s)	437, 593, 743
BstV1I	GCAGC	3 cut(s)	310, 636, 645
BsuRI	GGCC	1 cut(s)	723
BtgI	CCRYGG	2 cut(s)	106, 141
BveI	ACCTGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	175, 721
Csp6I	GTAC	4 cut(s)	156, 309, 468, 614
CviAII	CATG	7 cut(s)	107, 151, 197, 256, 575, 648, 668
CviJI	RGCY	5 cut(s)	47, 113, 140, 203, 723
CviKI_1	RGCY	5 cut(s)	47, 113, 140, 203, 723
CviQI	GTAC	4 cut(s)	156, 309, 468, 614
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	410, 756
DpnII	GATC	2 cut(s)	408, 754
Eam1104I	CTCTTC	2 cut(s)	507, 657
EarI	CTCTTC	2 cut(s)	507, 657
Eco130I	CCWWGG	4 cut(s)	42, 106, 184, 312
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	175
Eco91I	GGTNACC	2 cut(s)	413, 569
EcoO109I	RGGNCCY	1 cut(s)	175
EcoO65I	GGTNACC	2 cut(s)	413, 569
EcoT14I	CCWWGG	4 cut(s)	42, 106, 184, 312
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	4 cut(s)	42, 106, 184, 312
FaeI	CATG	7 cut(s)	110, 154, 200, 259, 578, 651, 671
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FatI	CATG	7 cut(s)	106, 150, 196, 255, 574, 647, 667
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	299, 478, 625, 634
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	299, 478, 625, 634
GluI	GCNGC	4 cut(s)	299, 478, 625, 634
HaeIII	GGCC	1 cut(s)	723
HapII	CCGG	2 cut(s)	34, 509
Hin1II	CATG	7 cut(s)	110, 154, 200, 259, 578, 651, 671
HincII	GTYRAC	3 cut(s)	169, 395, 551
HindII	GTYRAC	3 cut(s)	169, 395, 551
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	34, 509
HphI	GGTGA	3 cut(s)	275, 425, 581
Hpy166II	GTNNAC	7 cut(s)	56, 169, 395, 551, 614, 691, 741
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	4 cut(s)	34, 82, 659, 734
Hpy8I	GTNNAC	7 cut(s)	56, 169, 395, 551, 614, 691, 741
HpyAV	CCTTC	2 cut(s)	253, 712
HpyCH4III	ACNGT	3 cut(s)	145, 222, 472
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	7 cut(s)	27, 350, 428, 584, 624, 633, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	630, 633
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	7 cut(s)	110, 154, 200, 259, 578, 651, 671
Kpn2I	TCCGGA	1 cut(s)	33
KpnI	GGTACC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	408, 754
LguI	GCTCTTC	2 cut(s)	507, 657
LmnI	GCTCC	2 cut(s)	52, 295
Lsp1109I	GCAGC	3 cut(s)	310, 636, 645
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	3 cut(s)	322, 413, 569
MalI	GATC	2 cut(s)	410, 756
MboI	GATC	2 cut(s)	408, 754
MboII	GAAGA	6 cut(s)	100, 144, 227, 524, 616, 674
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	5 cut(s)	115, 437, 519, 593, 743
MluCI	AATT	4 cut(s)	101, 494, 564, 694
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	9 cut(s)	41, 78, 166, 203, 446, 526, 650, 739, 741
MroI	TCCGGA	1 cut(s)	33
MseI	TTAA	2 cut(s)	458, 764
MspI	CCGG	2 cut(s)	34, 509
MunI	CAATTG	1 cut(s)	564
MwoI	GCNNNNNNNGC	2 cut(s)	630, 633
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	408, 754
NlaIII	CATG	7 cut(s)	110, 154, 200, 259, 578, 651, 671
NlaIV	GGNNCC	4 cut(s)	38, 48, 147, 310
NmuCI	GTSAC	2 cut(s)	413, 569
PaqCI	CACCTGC	1 cut(s)	355
PciSI	GCTCTTC	2 cut(s)	507, 657
PkrI	GCNGC	4 cut(s)	300, 479, 626, 635
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspEI	GGTNACC	2 cut(s)	413, 569
PspN4I	GGNNCC	4 cut(s)	38, 48, 147, 310
PspPI	GGNCC	2 cut(s)	175, 721
PspPPI	RGGWCCY	1 cut(s)	175
RsaI	GTAC	4 cut(s)	157, 310, 469, 615
RsaNI	GTAC	4 cut(s)	156, 309, 468, 614
SalI	GTCGAC	1 cut(s)	549
SapI	GCTCTTC	2 cut(s)	507, 657
SaqAI	TTAA	2 cut(s)	458, 764
SatI	GCNGC	4 cut(s)	299, 478, 625, 634
Sau3AI	GATC	2 cut(s)	408, 754
Sau96I	GGNCC	2 cut(s)	175, 721
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	5 cut(s)	115, 437, 519, 593, 743
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	732
SmoI	CTYRAG	1 cut(s)	732
Sse9I	AATT	4 cut(s)	101, 494, 564, 694
SsiI	CCGC	1 cut(s)	478
StyI	CCWWGG	4 cut(s)	42, 106, 184, 312
TaaI	ACNGT	3 cut(s)	145, 222, 472
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	2 cut(s)	62, 550
TasI	AATT	4 cut(s)	101, 494, 564, 694
TatI	WGTACW	1 cut(s)	613
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	458, 764
Tru9I	TTAA	2 cut(s)	458, 764
TseFI	GTSAC	2 cut(s)	413, 569
TseI	GCWGC	3 cut(s)	298, 624, 633
Tsp45I	GTSAC	2 cut(s)	413, 569
TspDTI	ATGAA	5 cut(s)	213, 236, 240, 272, 591
VneI	GTGCAC	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	101, 494
XmiI	GTMKAC	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.