Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Forward (+)

2036708 .. 2037175

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTAATCATTATGGGAGCGAGGCGATGTTTCGCGAGCAGTGCGGCAGTGCATGTTGGCTCCGATCTGCAGCAGGGTGCCCCGGCGCTGCAAGAGGTACGAGGACAAGGCTTCATCTTCGTCGTGCGTAGCGGAGGCTACTTTGGCCGGAGGAAAGAGGCGAAGTACAGACTTTGTTGTGGGTTTGCAAACGAGACCGACGTTTGCTTTGGTGGCATCAGGCTTGATGAGAAGGAGATCAGCGTCATGGTTTCAGGACTGGAGGAGAAGCGAGGTCGGAGATTTCTGCTAGAGATCAGCGCTCGGATCGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.55

Weight (kDa)

9.38

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	44, 132
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	145
AfaI	GTAC	2 cut(s)	99, 167
AfeI	AGCGCT	1 cut(s)	301
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	301
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	70, 88
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	2 cut(s)	88, 302
AsuC2I	CCSGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	75, 82
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	68
BfoI	RGCGCY	2 cut(s)	89, 303
BisI	GCNGC	3 cut(s)	45, 71, 89
BlsI	GCNGC	3 cut(s)	46, 72, 90
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	61, 79
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	75, 82
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	83, 148
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	64, 237, 294, 306
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	2 cut(s)	44, 132
BspANI	GGCC	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	61, 79
BspMAI	CTGCAG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	64, 237, 294, 306
BstC8I	GCNNGC	2 cut(s)	37, 313
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	2 cut(s)	89, 303
BstHHI	GCGC	2 cut(s)	88, 302
BstKTI	GATC	4 cut(s)	67, 240, 297, 309
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	4 cut(s)	64, 237, 294, 306
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 144, 213, 308
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	75, 82
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	40
BtsI	GCAGTG	2 cut(s)	46, 54
BtsIMutI	CAGTG	2 cut(s)	46, 54
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	37, 313
CfoI	GCGC	2 cut(s)	88, 302
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	98, 166
CviAII	CATG	2 cut(s)	53, 247
CviJI	RGCY	6 cut(s)	60, 111, 138, 147, 223, 315
CviKI_1	RGCY	6 cut(s)	60, 111, 138, 147, 223, 315
CviQI	GTAC	2 cut(s)	98, 166
DpnI	GATC	4 cut(s)	66, 239, 296, 308
DpnII	GATC	4 cut(s)	64, 237, 294, 306
EaeI	YGGCCR	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	188
Eco47III	AGCGCT	1 cut(s)	301
FaeI	CATG	2 cut(s)	56, 250
FaiI	YATR	3 cut(s)	14, 54, 248
FatI	CATG	2 cut(s)	52, 246
Fnu4HI	GCNGC	3 cut(s)	45, 71, 89
Fsp4HI	GCNGC	3 cut(s)	45, 71, 89
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	2 cut(s)	87, 301
GluI	GCNGC	3 cut(s)	45, 71, 89
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	2 cut(s)	89, 303
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	83, 148
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	88, 302
Hin1II	CATG	2 cut(s)	56, 250
Hin6I	GCGC	2 cut(s)	86, 300
HinP1I	GCGC	2 cut(s)	86, 300
HpaII	CCGG	2 cut(s)	83, 148
Hpy188I	TCNGA	3 cut(s)	64, 279, 306
Hpy188III	TCNNGA	2 cut(s)	34, 255
Hpy99I	CGWCG	2 cut(s)	125, 203
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	52, 70, 91, 188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 144, 213, 308
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	56, 250
HspAI	GCGC	2 cut(s)	86, 300
Kzo9I	GATC	4 cut(s)	64, 237, 294, 306
LmnI	GCTCC	2 cut(s)	17, 65
LpnPI	CCDG	6 cut(s)	59, 96, 161, 205, 240, 245
Lsp1109I	GCAGC	2 cut(s)	75, 82
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	201
MalI	GATC	4 cut(s)	66, 239, 296, 308
MboI	GATC	4 cut(s)	64, 237, 294, 306
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	8 cut(s)	15, 88, 95, 128, 144, 151, 256, 266
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	83, 148
MspR9I	CCNGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	41, 144, 213, 308
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	4 cut(s)	64, 237, 294, 306
NlaIII	CATG	2 cut(s)	56, 250
NlaIV	GGNNCC	2 cut(s)	61, 79
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	46, 72, 90
PspN4I	GGNNCC	2 cut(s)	61, 79
PstI	CTGCAG	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	315
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	2 cut(s)	99, 167
RsaNI	GTAC	2 cut(s)	98, 166
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	45, 71, 89
Sau3AI	GATC	4 cut(s)	64, 237, 294, 306
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	99, 204, 277, 317
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	68
SsiI	CCGC	2 cut(s)	44, 132
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	212
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	46, 54
TseI	GCWGC	2 cut(s)	70, 88
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	46, 54
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.