Rh5CG030400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001758
Physical Location & Seq
Forward (+)
1946107 .. 1946424
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG030400.1

Sequence Viewer

Length: 318 bp
ATGGAACTGCAAAGAGGTACTAAGGCAGAAGAACCTGAAGCTGCTGGAAACCCTTTGATTCAACCTGTAGTCAAAAGAGAACACATTTTCTGTCGATACTGTTTGAGCGTTGGAGATCATAAAACTTCAGTTTGCCCGAAGAAACATTACATATGTACAGACTGTGGTACCCTATTTCCCTGCGAGAAGAAGGACGCCCATGGCGAAGAACATAAAGTATTAAATTATTGCCTTGGTTGTAACAAATGGGGCCACTTGTTAGAAATGTGCCCTGACCTTGTTGATTCGGATGTAAACTATGACCCTCTAGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.96

Weight (kDa)

5.6

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 57, 111
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 19, 157, 169
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BanI GGYRCC 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BbvI GCAGC 1 cut(s) 28
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 169, 251
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 199, 232
Bse1I ACTGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 199, 232
BseGI GGATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 167
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 169, 251
BspT107I GGYRCC 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 155
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 199, 232
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 199, 232
Bst4CI ACNGT 2 cut(s) 101, 164
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 18, 156, 168
CviAII CATG 1 cut(s) 200
CviJI RGCY 2 cut(s) 41, 252
CviKI_1 RGCY 2 cut(s) 41, 252
CviQI GTAC 3 cut(s) 18, 156, 168
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 199, 232
Eco57I CTGAAG 2 cut(s) 57, 111
EcoT14I CCWWGG 2 cut(s) 199, 232
ErhI CCWWGG 2 cut(s) 199, 232
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 120, 152, 154, 201, 213, 300
FatI CATG 1 cut(s) 199
FauNDI CATATG 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 252
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 203
HinfI GANTC 2 cut(s) 58, 284
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 101, 164
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 203
KpnI GGTACC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 30, 48, 78, 193, 285, 298
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 41, 151, 199, 218
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 8, 315
MseI TTAA 1 cut(s) 221
NcoI CCATGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 152
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 169, 251
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 2 cut(s) 58, 284
PkrI GCNGC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 169, 251
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 3 cut(s) 19, 157, 169
RsaNI GTAC 3 cut(s) 18, 156, 168
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 19, 37, 43, 67, 279
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 199, 232
TaaI ACNGT 2 cut(s) 101, 164
TaqI TCGA 1 cut(s) 94
TasI AATT 1 cut(s) 223
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 2 cut(s) 58, 284
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.