Rh5CG027600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001758
Physical Location & Seq
Reverse (-)
1701063 .. 1702811
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG027600.1

Sequence Viewer

Length: 582 bp
ATGAGTACCAATCCAGTTGACGAGGACCTGAACCTTGGACTCCTCCATGAAGCTGACCACAAGGAAGAACAGTATGAAGCATCTACATCTCCTATTCCAATGGAGCAGCTAAAAGGTACCAAGGCAGAAGTAACTCCAATCTGCCCTAATACACAAGCACTTGTGGTAGAACAAGTCAAAAAAGATGACTATTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCAATAAACCGAAGAGAGGTTTAATGTTTTGTACCGTTTGCCGCCACATCTATCCCAAATTCTGTAAAAAACCGGAAGAGCACGGCAACAAAGCAGAGGACTATATTTTCTGTCGACATTGTTATACAATTGGTGACCATGAAACTGCAATGTGCCCCAATAAACCGAAGAAACGTGTAATGGTTTGCAGCGTTTGCAGCGACCTCTATCCGTGTAAAAATCAGGAAGAGCATGGCAACAAAGGAGTTGAAGTAAACAATTTTTGTTCTCAATGTAGTAAGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGAGTATGATCCAACTTTAACCTTGAACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

6.06

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 352
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 3 cut(s) 7, 118, 271
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 2 cut(s) 488, 574
AluBI AGCT 2 cut(s) 53, 109
AluI AGCT 2 cut(s) 53, 109
Alw21I GWGCWC 2 cut(s) 321, 545
Alw44I GTGCAC 1 cut(s) 541
AlwI GGATC 1 cut(s) 551
AoxI GGCC 1 cut(s) 523
ApaLI GTGCAC 1 cut(s) 541
ApeKI GCWGC 3 cut(s) 106, 426, 435
ApoI RAATTY 1 cut(s) 296
Asp718I GGTACC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 25, 523
AsuHPI GGTGA 2 cut(s) 227, 383
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 3 cut(s) 239, 395, 545
BanI GGYRCC 1 cut(s) 116
Bbv12I GWGCWC 2 cut(s) 321, 545
BbvI GCAGC 3 cut(s) 118, 438, 447
BceAI ACGGC 1 cut(s) 337
BisI GCNGC 4 cut(s) 107, 280, 427, 436
BlsI GCNGC 4 cut(s) 108, 281, 428, 437
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 25, 523
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 89
BoxI GACNNNNGTC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 34, 120
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 2 cut(s) 237, 393
BseDI CCNNGG 2 cut(s) 34, 120
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 2 cut(s) 237, 393
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 32, 563
BseSI GKGCMC 3 cut(s) 239, 395, 545
BseXI GCAGC 3 cut(s) 118, 438, 447
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 321, 545
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 4 cut(s) 239, 321, 395, 545
Bsp143I GATC 2 cut(s) 210, 556
BspACI CCGC 1 cut(s) 280
BspANI GGCC 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 2 cut(s) 309, 459
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 237, 393
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 34, 120
BssMI GATC 2 cut(s) 210, 556
BssT1I CCWWGG 2 cut(s) 34, 120
Bst4CI ACNGT 2 cut(s) 72, 274
Bst6I CTCTTC 3 cut(s) 245, 309, 459
BstAPI GCANNNNNTGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 207
BstEII GGTNACC 2 cut(s) 215, 371
BstKTI GATC 2 cut(s) 213, 559
BstMBI GATC 2 cut(s) 210, 556
BstMWI GCNNNNNNNGC 2 cut(s) 432, 435
BstPAI GACNNNNGTC 1 cut(s) 192
BstPI GGTNACC 2 cut(s) 215, 371
BstSLI GKGCMC 3 cut(s) 239, 395, 545
BstV1I GCAGC 3 cut(s) 118, 438, 447
BsuRI GGCC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 25, 523
Csp6I GTAC 3 cut(s) 6, 117, 270
CviAII CATG 3 cut(s) 47, 377, 470
CviJI RGCY 3 cut(s) 53, 109, 525
CviKI_1 RGCY 3 cut(s) 53, 109, 525
CviQI GTAC 3 cut(s) 6, 117, 270
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 212, 558
DpnII GATC 2 cut(s) 210, 556
Eam1104I CTCTTC 3 cut(s) 245, 309, 459
EarI CTCTTC 3 cut(s) 245, 309, 459
Eco130I CCWWGG 2 cut(s) 34, 120
Eco47I GGWCC 1 cut(s) 25
Eco91I GGTNACC 2 cut(s) 215, 371
EcoO109I RGGNCCY 1 cut(s) 25
EcoO65I GGTNACC 2 cut(s) 215, 371
EcoT14I CCWWGG 2 cut(s) 34, 120
ErhI CCWWGG 2 cut(s) 34, 120
FaeI CATG 3 cut(s) 50, 380, 473
FaiI YATR 8 cut(s) 48, 75, 222, 342, 363, 378, 471, 555
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 3 cut(s) 46, 376, 469
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 107, 280, 427, 436
Fsp4HI GCNGC 4 cut(s) 107, 280, 427, 436
GluI GCNGC 4 cut(s) 107, 280, 427, 436
HaeIII GGCC 1 cut(s) 525
HapII CCGG 1 cut(s) 311
Hin1II CATG 3 cut(s) 50, 380, 473
HincII GTYRAC 3 cut(s) 19, 197, 353
HindII GTYRAC 3 cut(s) 19, 197, 353
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 311
HphI GGTGA 2 cut(s) 227, 383
Hpy166II GTNNAC 5 cut(s) 19, 197, 353, 493, 543
Hpy188III TCNNGA 2 cut(s) 461, 536
Hpy8I GTNNAC 5 cut(s) 19, 197, 353, 493, 543
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 2 cut(s) 72, 274
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 5 cut(s) 230, 386, 426, 435, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 435
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 3 cut(s) 50, 380, 473
KpnI GGTACC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 210, 556
LguI GCTCTTC 2 cut(s) 309, 459
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 27, 41, 324, 446
Lsp1109I GCAGC 3 cut(s) 118, 438, 447
LweI GCATC 1 cut(s) 89
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 3 cut(s) 130, 215, 371
MalI GATC 2 cut(s) 212, 558
MboI GATC 2 cut(s) 210, 556
MboII GAAGA 5 cut(s) 77, 262, 326, 418, 476
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 4 cut(s) 239, 321, 395, 545
MluCI AATT 3 cut(s) 296, 366, 496
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 7 cut(s) 16, 53, 248, 328, 452, 541, 543
MseI TTAA 2 cut(s) 260, 566
MspI CCGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 432, 435
NdeII GATC 2 cut(s) 210, 556
NlaIII CATG 3 cut(s) 50, 380, 473
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 215, 371
PciSI GCTCTTC 2 cut(s) 309, 459
PkrI GCNGC 4 cut(s) 108, 281, 428, 437
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 25
PshAI GACNNNNGTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 25
PspEI GGTNACC 2 cut(s) 215, 371
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 25, 523
PspPPI RGGWCCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 7, 118, 271
RsaNI GTAC 3 cut(s) 6, 117, 270
SalI GTCGAC 1 cut(s) 351
SapI GCTCTTC 2 cut(s) 309, 459
SaqAI TTAA 2 cut(s) 260, 566
SatI GCNGC 4 cut(s) 107, 280, 427, 436
Sau3AI GATC 2 cut(s) 210, 556
Sau96I GGNCC 2 cut(s) 25, 523
SchI GAGTC 1 cut(s) 33
SduI GDGCHC 4 cut(s) 239, 321, 395, 545
SetI ASST 9 cut(s) 30, 36, 55, 111, 118, 259, 415, 444, 572
SfaNI GCATC 1 cut(s) 89
SinI GGWCC 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 3 cut(s) 296, 366, 496
SsiI CCGC 1 cut(s) 280
StyI CCWWGG 2 cut(s) 34, 120
TaaI ACNGT 2 cut(s) 72, 274
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 352
TasI AATT 3 cut(s) 296, 366, 496
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 260, 566
Tru9I TTAA 2 cut(s) 260, 566
TseFI GTSAC 2 cut(s) 215, 371
TseI GCWGC 3 cut(s) 106, 426, 435
Tsp45I GTSAC 2 cut(s) 215, 371
TspDTI ATGAA 3 cut(s) 63, 90, 393
TspGWI ACGGA 1 cut(s) 438
VneI GTGCAC 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.