Rh5CG028000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001758
Physical Location & Seq
Forward (+)
1739297 .. 1739611
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG028000.1

Sequence Viewer

Length: 315 bp
ATGGAACTGCAAAGAGGTACCAAGGCAGAAGAACCCGAAGCTGCTGGAAACCCTTTGATTCAACCTTTAGTCAAAAGAGAACACATTTTCTGTCGGTACTGTTTTAGCGTTGGAGATCATAAAACTTCAGTTTGCCCGAAGAAACATTACATATGTACAGACTGTGGTACCCTATTTCCCTGCGAGAAGAAGGACGTCCATGGCGAAGAACATAAAGTATTAAATTATTGCTATGGTTGTAAAAGATGGGGCCACTTGTTTGAAATGTGCCCTGACCTTGATAAATTGGATGTAAACTTTGACCCTCTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.02

Weight (kDa)

6.04

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
Acc65I GGTACC 2 cut(s) 17, 167
AccB1I GGYRCC 2 cut(s) 17, 167
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 4 cut(s) 19, 98, 157, 169
AgsI TTSAA 2 cut(s) 62, 263
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 41
Asp718I GGTACC 2 cut(s) 17, 167
AspS9I GGNCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BanI GGYRCC 2 cut(s) 17, 167
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 240
BfaI CTAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 19, 169, 251
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 21, 199
BseDI CCNNGG 2 cut(s) 21, 199
BseGI GGATG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 2 cut(s) 17, 167
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 19, 169, 251
BspT107I GGYRCC 2 cut(s) 17, 167
BsrGI TGTACA 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 21, 199
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 21, 199
Bst4CI ACNGT 2 cut(s) 101, 164
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 4 cut(s) 18, 97, 156, 168
CviAII CATG 1 cut(s) 200
CviJI RGCY 2 cut(s) 41, 252
CviKI_1 RGCY 2 cut(s) 41, 252
CviQI GTAC 4 cut(s) 18, 97, 156, 168
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 21, 199
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 21, 199
ErhI CCWWGG 2 cut(s) 21, 199
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 120, 152, 154, 201, 213, 234
FatI CATG 1 cut(s) 199
FauNDI CATATG 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 101, 164
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 203
KpnI GGTACC 2 cut(s) 21, 171
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 30, 193, 285
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 195
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 41, 151, 199, 218
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 2 cut(s) 223, 284
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 8, 315
MseI TTAA 1 cut(s) 221
NcoI CCATGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 152
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 3 cut(s) 19, 169, 251
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 19, 169, 251
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 4 cut(s) 19, 98, 157, 169
RsaNI GTAC 4 cut(s) 18, 97, 156, 168
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 19, 43, 67, 198, 279
Sse9I AATT 2 cut(s) 223, 284
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 21, 199
TaaI ACNGT 2 cut(s) 101, 164
TaiI ACGT 1 cut(s) 198
TasI AATT 2 cut(s) 223, 284
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.