Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

31410941 .. 31411749

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATGCAGATCCCAGTCGCCCCGAAAGCCGACGGCGTCGACAGCAACACCTCGGCTCTGGCTCGATCCAGCAACCCCCTTCCTCATAACCACCCTCAGTCAAGCATGGACTCAATCGGAGCCCTGGAAAAGCTTGGTCGAGATCGTGACGCCGTTTGCAGAAAAGACCACAGCCTCTCTAAGCCCACGCCGTCCTTCACTCGCCTCTGTCTGCAACATACGTCCATTGAAGAACCACGGATCCCCATGCAAGACCGTGTTACACTCATCTCGATGTCGAAACCAGAAAAGAAAATGACCTTCAGCAAGTCCGAGATGGCATGGACAACCTATCCCCCAGACCCCAGATTGCCACCAACGTCCCCAGAACACCCTTCTCATCTCTCTTCTTCGACTGGATTAACCTTCCCAACTAGTCGGAGAACTCTTCTGCTATTGCCGCCGATCTTGCCTCACCAAAATCCACCACGGCACCCTCAGTCAGTGCCTAAGCTGCCGCTAGTCTTGAAGCCATATCTTCTGCCATCGGAGAATGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

9.43

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	2 cut(s)	440, 497
AclWI	GGATC	4 cut(s)	4, 60, 235, 248
AcuI	CTGAAG	1 cut(s)	286
AcyI	GRCGYC	2 cut(s)	36, 150
AgsI	TTSAA	2 cut(s)	230, 508
AhlI	ACTAGT	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	123
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	133, 493
AluI	AGCT	2 cut(s)	133, 493
AlwI	GGATC	4 cut(s)	4, 60, 235, 248
ApeKI	GCWGC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	310, 532
BceAI	ACGGC	4 cut(s)	49, 137, 175, 485
BciT130I	CCWGG	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	2 cut(s)	414, 500
BisI	GCNGC	3 cut(s)	440, 494, 497
BlsI	GCNGC	3 cut(s)	441, 495, 498
Bme1390I	CCNGG	1 cut(s)	125
BmiI	GGNNCC	3 cut(s)	121, 242, 473
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	36, 150
BsaJI	CCNNGG	4 cut(s)	51, 123, 236, 467
Bse1I	ACTGG	2 cut(s)	14, 400
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	4 cut(s)	51, 123, 236, 467
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	2 cut(s)	110, 491
BseNI	ACTGG	2 cut(s)	14, 400
BseXI	GCAGC	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	9, 65, 142, 240, 444
BspACI	CCGC	2 cut(s)	440, 497
BspCNI	CTCAG	2 cut(s)	109, 490
BspLI	GGNNCC	3 cut(s)	121, 242, 473
BspPI	GGATC	4 cut(s)	4, 60, 235, 248
BspT107I	GGYRCC	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	14, 400
BssECI	CCNNGG	4 cut(s)	51, 123, 236, 467
BssMI	GATC	5 cut(s)	9, 65, 142, 240, 444
BssNI	GRCGYC	2 cut(s)	36, 150
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	391, 432
BstACI	GRCGYC	2 cut(s)	36, 150
BstDEI	CTNAG	4 cut(s)	96, 180, 477, 489
BstDSI	CCRYGG	2 cut(s)	236, 467
BstKTI	GATC	5 cut(s)	12, 68, 145, 243, 447
BstMBI	GATC	5 cut(s)	9, 65, 142, 240, 444
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 42, 439, 448, 493
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	2 cut(s)	9, 240
BstYI	RGATCY	2 cut(s)	9, 240
BtgI	CCRYGG	2 cut(s)	236, 467
BtsIMutI	CAGTG	1 cut(s)	489
CseI	GACGC	2 cut(s)	25, 158
CviAII	CATG	3 cut(s)	106, 247, 321
CviJI	RGCY	9 cut(s)	29, 56, 62, 122, 133, 174, 184, 493, 511
CviKI_1	RGCY	9 cut(s)	29, 56, 62, 122, 133, 174, 184, 493, 511
DdeI	CTNAG	4 cut(s)	96, 180, 477, 489
DpnI	GATC	5 cut(s)	11, 67, 144, 242, 446
DpnII	GATC	5 cut(s)	9, 65, 142, 240, 444
Eam1104I	CTCTTC	2 cut(s)	391, 432
EarI	CTCTTC	2 cut(s)	391, 432
Eco24I	GRGCYC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	3 cut(s)	109, 250, 324
FaiI	YATR	6 cut(s)	87, 107, 219, 248, 322, 514
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	105, 246, 320
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	440, 494, 497
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	440, 494, 497
FspBI	CTAG	2 cut(s)	414, 500
GluI	GCNGC	3 cut(s)	440, 494, 497
HgaI	GACGC	2 cut(s)	25, 158
Hin1I	GRCGYC	2 cut(s)	36, 150
Hin1II	CATG	3 cut(s)	109, 250, 324
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	119, 313, 420, 529
Hpy188III	TCNNGA	4 cut(s)	140, 146, 271, 505
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	35, 41
HpyAV	CCTTC	5 cut(s)	89, 205, 310, 384, 415
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	221, 359
HpyCH4V	TGCA	4 cut(s)	7, 159, 214, 250
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 42, 439, 448, 493
HpyF3I	CTNAG	4 cut(s)	96, 180, 477, 489
HpySE526I	ACGT	2 cut(s)	221, 359
Hsp92I	GRCGYC	2 cut(s)	36, 150
Hsp92II	CATG	3 cut(s)	109, 250, 324
Kzo9I	GATC	5 cut(s)	9, 65, 142, 240, 444
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	414, 500
MaeII	ACGT	2 cut(s)	221, 359
MaeIII	GTNAC	2 cut(s)	146, 259
MalI	GATC	5 cut(s)	11, 67, 144, 242, 446
MboI	GATC	5 cut(s)	9, 65, 142, 240, 444
MboII	GAAGA	5 cut(s)	242, 378, 381, 419, 509
MflI	RGATCY	2 cut(s)	9, 240
MhlI	GDGCHC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	7 cut(s)	61, 93, 105, 185, 215, 462, 486
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	5 cut(s)	26, 42, 439, 448, 493
NdeII	GATC	5 cut(s)	9, 65, 142, 240, 444
NlaIII	CATG	3 cut(s)	109, 250, 324
NlaIV	GGNNCC	3 cut(s)	121, 242, 473
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	441, 495, 498
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	121, 242, 473
PsuI	RGATCY	2 cut(s)	9, 240
PsyI	GACNNNGTC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	3 cut(s)	440, 494, 497
Sau3AI	GATC	5 cut(s)	9, 65, 142, 240, 444
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	8 cut(s)	53, 135, 224, 302, 332, 362, 407, 495
SmiMI	CAYNNNNRTG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	413
SsiI	CCGC	2 cut(s)	440, 497
SspMI	CTAG	2 cut(s)	414, 500
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	224, 362
TaqI	TCGA	6 cut(s)	39, 64, 139, 272, 278, 392
TauI	GCSGC	2 cut(s)	442, 499
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	489
Tth111I	GACNNNGTC	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	2 cut(s)	414, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.