Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Forward (+)

23616770 .. 23617719

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30501.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGTAGTATTTGCGAGATTATCCACAACCTCCTCCGGCACCTCAATGCTCCCAGAAAACTTTCGACTTTTATTTCAGGGTTCGTGAGGAAGATTATCTCAATATTCCATGGGGTTCTCCTTGTATTCAGACGAAGAAAAGCAATAGAGCAGCAAGAAGGTTCCAAGGCAAAAGTAACTCCATTCTACCCAGATACACCTGAGGATGACTGCATTTTTTGTCAACATTGTAATAAGACTGGTGACCATGAAGCTGCAGTCTGCCCCAATAGAGGTTTAATGTATTGCACCGTTTGCCGCCACATCTATCCCTTATTCTGTAAAAATCCGGAAGAGCACGGCGACAAAGTAGAGGACTACAAGTCTTGTGCATATTGTAAAAAGAAAGGTGACCATGAAACTTCAATGTGCCCCGATAAATCGAAGATGCGCGTATTGGTTTGCAGCGTTTGCTACAACCTCTATCCGTGTAAAAATCAGGAAGAGCATGGCAGCAAAGGAGTCGAAGTAGACAATTTTTGTTGTCGTTGCCTTAGGTTTGGCCACATGCGTGAAGAGTGCACATACGAGTATTGTGATCCAAATTTTGACTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

23.09

Weight (kDa)

7.46

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	583
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	405, 596
AhdI	GACNNNNNGTC	1 cut(s)	361
AleI	CACNNNNGTG	1 cut(s)	549
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	2 cut(s)	339, 563
Alw44I	GTGCAC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	572
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	1 cut(s)	541
ApaLI	GTGCAC	1 cut(s)	559
ApeKI	GCWGC	4 cut(s)	151, 254, 444, 492
ApoI	RAATTY	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	254, 401
AxyI	CCTNAGG	2 cut(s)	201, 533
BaeGI	GKGCMC	2 cut(s)	413, 563
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	339, 563
BbvI	GCAGC	4 cut(s)	163, 241, 456, 504
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	5 cut(s)	152, 255, 298, 445, 493
BlsI	GCNGC	5 cut(s)	153, 256, 299, 446, 494
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	41, 163
BmsI	GCATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	109, 165
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	244
Bse21I	CCTNAGG	2 cut(s)	201, 533
BseAI	TCCGGA	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	109, 165
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	413, 563
BseXI	GCAGC	4 cut(s)	163, 241, 456, 504
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	339, 563
BsiSI	CCGG	2 cut(s)	37, 329
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	1 cut(s)	543
Bsp1286I	GDGCHC	3 cut(s)	339, 413, 563
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	577
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	41, 163
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	2 cut(s)	327, 477
BspT107I	GGYRCC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	109, 165
BssMI	GATC	1 cut(s)	577
BssT1I	CCWWGG	2 cut(s)	109, 165
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	3 cut(s)	327, 477, 549
BstAPI	GCANNNNNTGC	2 cut(s)	294, 450
BstDEI	CTNAG	2 cut(s)	201, 533
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	2 cut(s)	242, 389
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	1 cut(s)	580
BstMBI	GATC	1 cut(s)	577
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 450
BstNSI	RCATGY	1 cut(s)	550
BstPI	GGTNACC	2 cut(s)	242, 389
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	2 cut(s)	413, 563
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	163, 241, 456, 504
Bsu36I	CCTNAGG	2 cut(s)	201, 533
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	432
CviAII	CATG	5 cut(s)	110, 248, 395, 488, 547
CviJI	RGCY	2 cut(s)	254, 543
CviKI_1	RGCY	2 cut(s)	254, 543
DdeI	CTNAG	2 cut(s)	201, 533
DpnI	GATC	1 cut(s)	579
DpnII	GATC	1 cut(s)	577
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	3 cut(s)	327, 477, 549
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	3 cut(s)	327, 477, 549
Eco130I	CCWWGG	2 cut(s)	109, 165
Eco81I	CCTNAGG	2 cut(s)	201, 533
Eco91I	GGTNACC	2 cut(s)	242, 389
EcoO65I	GGTNACC	2 cut(s)	242, 389
EcoT14I	CCWWGG	2 cut(s)	109, 165
ErhI	CCWWGG	2 cut(s)	109, 165
FaeI	CATG	5 cut(s)	113, 251, 398, 491, 550
FaiI	YATR	7 cut(s)	111, 249, 373, 396, 489, 548, 565
FatI	CATG	5 cut(s)	109, 247, 394, 487, 546
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	5 cut(s)	152, 255, 298, 445, 493
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	152, 255, 298, 445, 493
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	5 cut(s)	152, 255, 298, 445, 493
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	2 cut(s)	37, 329
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	5 cut(s)	113, 251, 398, 491, 550
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	2 cut(s)	37, 329
HphI	GGTGA	2 cut(s)	254, 401
Hpy166II	GTNNAC	3 cut(s)	224, 511, 561
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	3 cut(s)	85, 329, 479
Hpy8I	GTNNAC	3 cut(s)	224, 511, 561
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	6 cut(s)	213, 257, 288, 371, 444, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 450
HpyF3I	CTNAG	2 cut(s)	201, 533
Hsp92II	CATG	5 cut(s)	113, 251, 398, 491, 550
HspAI	GCGC	1 cut(s)	430
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	577
LguI	GCTCTTC	2 cut(s)	327, 477
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	50, 63, 67, 204, 213, 225, 342, 464
Lsp1109I	GCAGC	4 cut(s)	163, 241, 456, 504
LweI	GCATC	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	175, 242, 389
MalI	GATC	1 cut(s)	579
MboI	GATC	1 cut(s)	577
MboII	GAAGA	6 cut(s)	103, 147, 344, 436, 494, 566
MhlI	GDGCHC	3 cut(s)	339, 413, 563
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	2 cut(s)	514, 583
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	510
MnlI	CCTC	8 cut(s)	41, 44, 53, 81, 196, 266, 346, 470
Mox20I	TGGCCA	1 cut(s)	543
MroI	TCCGGA	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	2 cut(s)	45, 549
Msp20I	TGGCCA	1 cut(s)	543
MspI	CCGG	2 cut(s)	37, 329
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	294, 450
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	577
NlaIII	CATG	5 cut(s)	113, 251, 398, 491, 550
NlaIV	GGNNCC	2 cut(s)	41, 163
NmuCI	GTSAC	2 cut(s)	242, 389
NspI	RCATGY	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	549
PciSI	GCTCTTC	2 cut(s)	327, 477
PdmI	GAANNNNTTC	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	153, 256, 299, 446, 494
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PspEI	GGTNACC	2 cut(s)	242, 389
PspN4I	GGNNCC	2 cut(s)	41, 163
PstI	CTGCAG	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	45, 549
SapI	GCTCTTC	2 cut(s)	327, 477
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	5 cut(s)	152, 255, 298, 445, 493
Sau3AI	GATC	1 cut(s)	577
SchI	GAGTC	1 cut(s)	510
SduI	GDGCHC	3 cut(s)	339, 413, 563
SetI	ASST	9 cut(s)	33, 45, 163, 202, 256, 277, 391, 462, 539
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	45, 549
Sse9I	AATT	2 cut(s)	514, 583
SsiI	CCGC	1 cut(s)	298
SspI	AATATT	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	109, 165
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	65, 422, 504
TasI	AATT	2 cut(s)	514, 583
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	2 cut(s)	242, 389
TseI	GCWGC	4 cut(s)	151, 254, 444, 492
Tsp45I	GTSAC	2 cut(s)	242, 389
TspDTI	ATGAA	2 cut(s)	264, 411
TspGWI	ACGGA	1 cut(s)	456
VneI	GTGCAC	1 cut(s)	559
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.