Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Forward (+)

2161737 .. 2163226

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGTAGTATCCCCAAGATTATCCGCAATCTCCGGCACCCCAAGGCTCCCAGTGAACTTTGGACTTTTATTTCAGGGGTCGTGAGGAAGATTATCTCCAAATTCCATGGGGTTCTCCTTGTGTTCAGACGAAGAAAAGCAATGGAGCAGCAAAAAGGTACCAAGGCAGAAGTAACTCCAATCTGCCCTGATACACCTGCACTTGTGGTAGAACAAGTCAAAAAAGATGACTATGTTTTTTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCCTTCAATCGAAGGGAGGTTTAATGATTTGCAGCGTTTGCCGCGACTTTTATCCGTGTAAAAATCAGGAAGAGCATGGCAACAAAGCAGAGGACTACATTTCTTGTCGACATTGTTACACGATTGGTGACCATAAAACTGCAATGTGCCCAAAAAAACCGAAGAAACGGGTAATGGTTTGCAGCGTTTGCCGCGATCTCTATCCCTGTAAAAATCAGGAAGAGCATGGCAACAATGGAGTTGAAGTAAACAATTTTTGTTGTCTTTGTGGTATGAATGGCCACTTGCCTCAAGAGTGCACAGAGGATTATGATCCATCTTTAACCTTGAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.5

Weight (kDa)

8.62

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	36, 158
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	2 cut(s)	330, 480
AciI	CCGC	3 cut(s)	25, 328, 478
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	293, 530, 616
Alw21I	GWGCWC	1 cut(s)	587
Alw44I	GTGCAC	1 cut(s)	583
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	583
ApeKI	GCWGC	3 cut(s)	148, 318, 468
ApoI	RAATTY	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	275, 425
BaeGI	GKGCMC	3 cut(s)	287, 437, 587
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	2 cut(s)	36, 158
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	160, 330, 480
BccI	CCATC	1 cut(s)	610
BciVI	GTATCC	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	5 cut(s)	149, 319, 328, 469, 478
BlsI	GCNGC	5 cut(s)	150, 320, 329, 470, 479
BmiI	GGNNCC	3 cut(s)	38, 48, 160
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	561
BsaBI	GATNNNNATC	2 cut(s)	486, 597
BsaJI	CCNNGG	3 cut(s)	42, 106, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	3 cut(s)	147, 285, 435
Bse8I	GATNNNNATC	2 cut(s)	486, 597
BseDI	CCNNGG	3 cut(s)	42, 106, 162
BseJI	GATNNNNATC	2 cut(s)	486, 597
BseMI	GCAATG	3 cut(s)	147, 285, 435
BseNI	ACTGG	1 cut(s)	51
BseSI	GKGCMC	3 cut(s)	287, 437, 587
BseXI	GCAGC	3 cut(s)	160, 330, 480
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	330, 480
BshFI	GGCC	1 cut(s)	567
BshNI	GGYRCC	2 cut(s)	36, 158
BsiHKAI	GWGCWC	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	34
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	3 cut(s)	287, 437, 587
Bsp143I	GATC	3 cut(s)	258, 481, 598
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	3 cut(s)	25, 328, 478
BspANI	GGCC	1 cut(s)	567
BspFNI	CGCG	2 cut(s)	330, 480
BspLI	GGNNCC	3 cut(s)	38, 48, 160
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	593
BspQI	GCTCTTC	2 cut(s)	351, 501
BspT107I	GGYRCC	2 cut(s)	36, 158
BsrDI	GCAATG	3 cut(s)	147, 285, 435
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	42, 106, 162
BssMI	GATC	3 cut(s)	258, 481, 598
BssT1I	CCWWGG	3 cut(s)	42, 106, 162
Bst6I	CTCTTC	2 cut(s)	351, 501
BstAPI	GCANNNNNTGC	2 cut(s)	324, 474
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	2 cut(s)	263, 413
BstFNI	CGCG	2 cut(s)	330, 480
BstKTI	GATC	3 cut(s)	261, 484, 601
BstMBI	GATC	3 cut(s)	258, 481, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 327, 474, 477
BstPI	GGTNACC	2 cut(s)	263, 413
BstSLI	GKGCMC	3 cut(s)	287, 437, 587
BstUI	CGCG	2 cut(s)	330, 480
BstV1I	GCAGC	3 cut(s)	160, 330, 480
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	107, 362, 512
CviJI	RGCY	2 cut(s)	47, 567
CviKI_1	RGCY	2 cut(s)	47, 567
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	260, 483, 600
DpnII	GATC	3 cut(s)	258, 481, 598
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	351, 501
EarI	CTCTTC	2 cut(s)	351, 501
Eco130I	CCWWGG	3 cut(s)	42, 106, 162
Eco91I	GGTNACC	2 cut(s)	263, 413
EcoO65I	GGTNACC	2 cut(s)	263, 413
EcoT14I	CCWWGG	3 cut(s)	42, 106, 162
ErhI	CCWWGG	3 cut(s)	42, 106, 162
FaeI	CATG	3 cut(s)	110, 365, 515
FaiI	YATR	8 cut(s)	108, 234, 270, 363, 420, 513, 560, 597
FatI	CATG	3 cut(s)	106, 361, 511
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	149, 319, 328, 469, 478
Fsp4HI	GCNGC	5 cut(s)	149, 319, 328, 469, 478
GluI	GCNGC	5 cut(s)	149, 319, 328, 469, 478
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	3 cut(s)	110, 365, 515
HincII	GTYRAC	2 cut(s)	245, 395
HindII	GTYRAC	2 cut(s)	245, 395
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	275, 425
Hpy166II	GTNNAC	5 cut(s)	56, 245, 395, 535, 585
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	4 cut(s)	82, 353, 503, 578
Hpy8I	GTNNAC	5 cut(s)	56, 245, 395, 535, 585
HpyAV	CCTTC	2 cut(s)	292, 299
HpyCH4V	TGCA	6 cut(s)	200, 278, 318, 428, 468, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 327, 474, 477
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	110, 365, 515
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	258, 481, 598
LguI	GCTCTTC	2 cut(s)	351, 501
LmnI	GCTCC	2 cut(s)	52, 145
LpnPI	CCDG	8 cut(s)	47, 60, 64, 201, 210, 338, 488, 505
Lsp1109I	GCAGC	3 cut(s)	160, 330, 480
MaeIII	GTNAC	4 cut(s)	172, 263, 401, 413
MalI	GATC	3 cut(s)	260, 483, 600
MboI	GATC	3 cut(s)	258, 481, 598
MboII	GAAGA	5 cut(s)	100, 144, 368, 460, 518
MhlI	GDGCHC	3 cut(s)	287, 437, 587
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	2 cut(s)	101, 538
MluNI	TGGCCA	1 cut(s)	567
MnlI	CCTC	5 cut(s)	78, 296, 370, 583, 585
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	308, 608
Msp20I	TGGCCA	1 cut(s)	567
MspI	CCGG	1 cut(s)	34
MvnI	CGCG	2 cut(s)	330, 480
MwoI	GCNNNNNNNGC	4 cut(s)	324, 327, 474, 477
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	258, 481, 598
NlaIII	CATG	3 cut(s)	110, 365, 515
NlaIV	GGNNCC	3 cut(s)	38, 48, 160
NmuCI	GTSAC	2 cut(s)	263, 413
PaqCI	CACCTGC	1 cut(s)	205
PciSI	GCTCTTC	2 cut(s)	351, 501
PkrI	GCNGC	5 cut(s)	150, 320, 329, 470, 479
PspEI	GGTNACC	2 cut(s)	263, 413
PspN4I	GGNNCC	3 cut(s)	38, 48, 160
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	393
SapI	GCTCTTC	2 cut(s)	351, 501
SaqAI	TTAA	2 cut(s)	308, 608
SatI	GCNGC	5 cut(s)	149, 319, 328, 469, 478
Sau3AI	GATC	3 cut(s)	258, 481, 598
SduI	GDGCHC	3 cut(s)	287, 437, 587
SetI	ASST	4 cut(s)	160, 199, 307, 614
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	101, 538
SsiI	CCGC	3 cut(s)	25, 328, 478
StyI	CCWWGG	3 cut(s)	42, 106, 162
TaqI	TCGA	2 cut(s)	296, 394
TasI	AATT	2 cut(s)	101, 538
TauI	GCSGC	2 cut(s)	330, 480
Tru1I	TTAA	2 cut(s)	308, 608
Tru9I	TTAA	2 cut(s)	308, 608
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	2 cut(s)	263, 413
TseI	GCWGC	3 cut(s)	148, 318, 468
Tsp45I	GTSAC	2 cut(s)	263, 413
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	58
VneI	GTGCAC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.