Rh5AG024600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001758
Physical Location & Seq
Reverse (-)
1701064 .. 1702630
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG024600.1

Sequence Viewer

Length: 615 bp
ATGATTCTCTTTTTCCACACAGCCACGGTTCCCATGAGTACCAATCCAGTTGACGAGGACCTGAACCTTGGACTCCTCCATGAAGCTGACCACAAGGAAGAACAGTATGAAGCATCTACATCTCCTATTCCAATGGAGCAGCTAAAAGGTACCAAGGCAGAAGTAACTCCAATCTGCCCTAATACACAAGCACTTGTGGTAGAACAAGTCAAAAAAGATGACTATTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCAATAAACCGAAGAGAGGTTTAATGTTTTGTACCGTTTGCCGCCACATCTATCCCAAATTCTGTAAAAAACCGGAAGAGCACGGCAACAAAGCAGAGGACTATATTTTCTGTCGACATTGTTATACAATTGGTGACCATGAAACTGCAATGTGCCCCAATAAACCGAAGAAACGTGTAATGGTTTGCAGCGTTTGCAGCGACCTCTATCCGTGTAAAAATCAGGAAGAGCATGGCAACAAAGGAGTTGAAGTAAACAATTTTTGTTCTCAATGTAGTAAGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGAGTATGATCCAACTTTAACCTTGAACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.17

Weight (kDa)

6.12

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 385
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 3 cut(s) 40, 151, 304
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 2 cut(s) 521, 607
AluBI AGCT 2 cut(s) 86, 142
AluI AGCT 2 cut(s) 86, 142
Alw21I GWGCWC 2 cut(s) 354, 578
Alw44I GTGCAC 1 cut(s) 574
AlwI GGATC 1 cut(s) 584
AoxI GGCC 1 cut(s) 556
ApaLI GTGCAC 1 cut(s) 574
ApeKI GCWGC 3 cut(s) 139, 459, 468
ApoI RAATTY 1 cut(s) 329
Asp718I GGTACC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 58, 556
AsuHPI GGTGA 2 cut(s) 260, 416
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 3 cut(s) 272, 428, 578
BanI GGYRCC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 354, 578
BbvI GCAGC 3 cut(s) 151, 471, 480
BceAI ACGGC 1 cut(s) 370
BisI GCNGC 4 cut(s) 140, 313, 460, 469
BlsI GCNGC 4 cut(s) 141, 314, 461, 470
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 58, 556
BmiI GGNNCC 2 cut(s) 30, 151
BmsI GCATC 1 cut(s) 122
BoxI GACNNNNGTC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 24, 67, 153
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 2 cut(s) 270, 426
BseDI CCNNGG 3 cut(s) 24, 67, 153
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 2 cut(s) 270, 426
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 2 cut(s) 65, 596
BseSI GKGCMC 3 cut(s) 272, 428, 578
BseXI GCAGC 3 cut(s) 151, 471, 480
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 354, 578
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 287
BsnI GGCC 1 cut(s) 558
Bsp1286I GDGCHC 4 cut(s) 272, 354, 428, 578
Bsp143I GATC 2 cut(s) 243, 589
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 30, 151
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 2 cut(s) 342, 492
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 270, 426
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 24, 67, 153
BssMI GATC 2 cut(s) 243, 589
BssT1I CCWWGG 2 cut(s) 67, 153
Bst4CI ACNGT 3 cut(s) 28, 105, 307
Bst6I CTCTTC 3 cut(s) 278, 342, 492
BstAPI GCANNNNNTGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 24
BstEII GGTNACC 2 cut(s) 248, 404
BstKTI GATC 2 cut(s) 246, 592
BstMBI GATC 2 cut(s) 243, 589
BstMWI GCNNNNNNNGC 2 cut(s) 465, 468
BstPAI GACNNNNGTC 1 cut(s) 225
BstPI GGTNACC 2 cut(s) 248, 404
BstSLI GKGCMC 3 cut(s) 272, 428, 578
BstV1I GCAGC 3 cut(s) 151, 471, 480
BsuRI GGCC 1 cut(s) 558
BtgI CCRYGG 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 58, 556
Csp6I GTAC 3 cut(s) 39, 150, 303
CviAII CATG 4 cut(s) 34, 80, 410, 503
CviJI RGCY 4 cut(s) 23, 86, 142, 558
CviKI_1 RGCY 4 cut(s) 23, 86, 142, 558
CviQI GTAC 3 cut(s) 39, 150, 303
DdeI CTNAG 1 cut(s) 240
DpnI GATC 2 cut(s) 245, 591
DpnII GATC 2 cut(s) 243, 589
Eam1104I CTCTTC 3 cut(s) 278, 342, 492
EarI CTCTTC 3 cut(s) 278, 342, 492
Eco130I CCWWGG 2 cut(s) 67, 153
Eco47I GGWCC 1 cut(s) 58
Eco91I GGTNACC 2 cut(s) 248, 404
EcoO109I RGGNCCY 1 cut(s) 58
EcoO65I GGTNACC 2 cut(s) 248, 404
EcoT14I CCWWGG 2 cut(s) 67, 153
ErhI CCWWGG 2 cut(s) 67, 153
FaeI CATG 4 cut(s) 37, 83, 413, 506
FaiI YATR 9 cut(s) 35, 81, 108, 255, 375, 396, 411, 504, 588
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FatI CATG 4 cut(s) 33, 79, 409, 502
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 140, 313, 460, 469
Fsp4HI GCNGC 4 cut(s) 140, 313, 460, 469
GluI GCNGC 4 cut(s) 140, 313, 460, 469
HaeIII GGCC 1 cut(s) 558
HapII CCGG 1 cut(s) 344
Hin1II CATG 4 cut(s) 37, 83, 413, 506
HincII GTYRAC 3 cut(s) 52, 230, 386
HindII GTYRAC 3 cut(s) 52, 230, 386
HinfI GANTC 2 cut(s) 4, 72
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 260, 416
Hpy166II GTNNAC 5 cut(s) 52, 230, 386, 526, 576
Hpy188III TCNNGA 2 cut(s) 494, 569
Hpy8I GTNNAC 5 cut(s) 52, 230, 386, 526, 576
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 28, 105, 307
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 5 cut(s) 263, 419, 459, 468, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 468
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 4 cut(s) 37, 83, 413, 506
KpnI GGTACC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 243, 589
LguI GCTCTTC 2 cut(s) 342, 492
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 60, 74, 357, 479
Lsp1109I GCAGC 3 cut(s) 151, 471, 480
LweI GCATC 1 cut(s) 122
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 3 cut(s) 163, 248, 404
MalI GATC 2 cut(s) 245, 591
MboI GATC 2 cut(s) 243, 589
MboII GAAGA 5 cut(s) 110, 295, 359, 451, 509
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 4 cut(s) 272, 354, 428, 578
MluCI AATT 3 cut(s) 329, 399, 529
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 7 cut(s) 49, 86, 281, 361, 485, 574, 576
MseI TTAA 2 cut(s) 293, 599
MspI CCGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 465, 468
NdeII GATC 2 cut(s) 243, 589
NlaIII CATG 4 cut(s) 37, 83, 413, 506
NlaIV GGNNCC 2 cut(s) 30, 151
NmuCI GTSAC 2 cut(s) 248, 404
PciSI GCTCTTC 2 cut(s) 342, 492
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 141, 314, 461, 470
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 58
PshAI GACNNNNGTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 58
PspEI GGTNACC 2 cut(s) 248, 404
PspN4I GGNNCC 2 cut(s) 30, 151
PspPI GGNCC 2 cut(s) 58, 556
PspPPI RGGWCCY 1 cut(s) 58
RsaI GTAC 3 cut(s) 40, 151, 304
RsaNI GTAC 3 cut(s) 39, 150, 303
SalI GTCGAC 1 cut(s) 384
SapI GCTCTTC 2 cut(s) 342, 492
SaqAI TTAA 2 cut(s) 293, 599
SatI GCNGC 4 cut(s) 140, 313, 460, 469
Sau3AI GATC 2 cut(s) 243, 589
Sau96I GGNCC 2 cut(s) 58, 556
SchI GAGTC 1 cut(s) 66
SduI GDGCHC 4 cut(s) 272, 354, 428, 578
SetI ASST 9 cut(s) 63, 69, 88, 144, 151, 292, 448, 477, 605
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
Sse9I AATT 3 cut(s) 329, 399, 529
SsiI CCGC 1 cut(s) 313
StyI CCWWGG 2 cut(s) 67, 153
TaaI ACNGT 3 cut(s) 28, 105, 307
TaiI ACGT 1 cut(s) 448
TaqI TCGA 1 cut(s) 385
TasI AATT 3 cut(s) 329, 399, 529
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 293, 599
Tru9I TTAA 2 cut(s) 293, 599
TseFI GTSAC 2 cut(s) 248, 404
TseI GCWGC 3 cut(s) 139, 459, 468
Tsp45I GTSAC 2 cut(s) 248, 404
TspDTI ATGAA 3 cut(s) 96, 123, 426
TspGWI ACGGA 1 cut(s) 471
VneI GTGCAC 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.