Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

1939502 .. 1940964

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTAGTTTCTGCGAGATTATCCGCAACCTCCGGAACCCCAAGGCTCCCAGTAAACTTTCGACTTTTATTTCAGGGTTCGTGAGGAAGATTATCTCCAAATTCCATGGGCTCTCCTTGTCAATGGAGCAGCAAAAAGATACCAAGGCAGAAGTAACTCCAATCTGCCCTAATACACAAGCACTTGTGGTAGAACAAGTCAAAAAAAATGACTATTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCAATAAACCGAAGAGAGGTTTAATGTTTTGTACCGTTTGCCGCCACATCTATCCCAAATTCTGTAAAAAACCGGAAGAGCACGGCAACAAAGCAGAGGACTATATTTTCTGTCGACATTGTTATACAATTGGTGACCATGAAACTGCAATGTGCCCCAATAAACCGAAGAAACGTGTAATGGTTTGCAGCGTTTGCAGCGACCTCTATCCATGTAAAAATCAGGAAGAGCATGGCAACAAAGGAGTTGAAGTAAACAATTTTTGTTCTCAATGTAGTAAGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGAGTATGATCCAACTTTAACCTTGAACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.91

Weight (kDa)

8.7

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	2 cut(s)	25, 304
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	101, 320
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	512, 598
Alw21I	GWGCWC	2 cut(s)	345, 569
Alw44I	GTGCAC	1 cut(s)	565
AlwI	GGATC	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	565
ApeKI	GCWGC	3 cut(s)	130, 450, 459
ApoI	RAATTY	2 cut(s)	101, 320
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	251, 407
BaeGI	GKGCMC	3 cut(s)	263, 419, 569
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	345, 569
BbvI	GCAGC	3 cut(s)	142, 462, 471
BceAI	ACGGC	1 cut(s)	361
BisI	GCNGC	4 cut(s)	131, 304, 451, 460
BlsI	GCNGC	4 cut(s)	132, 305, 452, 461
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	38, 48
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BoxI	GACNNNNGTC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	543
BsaJI	CCNNGG	3 cut(s)	42, 106, 144
BsaWI	WCCGGW	2 cut(s)	33, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	2 cut(s)	261, 417
BseAI	TCCGGA	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	42, 106, 144
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	2 cut(s)	261, 417
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	587
BseSI	GKGCMC	3 cut(s)	263, 419, 569
BseXI	GCAGC	3 cut(s)	142, 462, 471
BshFI	GGCC	1 cut(s)	549
BsiHKAI	GWGCWC	2 cut(s)	345, 569
BsiSI	CCGG	2 cut(s)	34, 335
BslI	CCNNNNNNNGG	1 cut(s)	278
BsnI	GGCC	1 cut(s)	549
Bsp1286I	GDGCHC	5 cut(s)	114, 263, 345, 419, 569
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	234, 580
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	2 cut(s)	25, 304
BspANI	GGCC	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	38, 48
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	2 cut(s)	333, 483
BsrDI	GCAATG	2 cut(s)	261, 417
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	42, 106, 144
BssMI	GATC	2 cut(s)	234, 580
BssT1I	CCWWGG	3 cut(s)	42, 106, 144
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	3 cut(s)	269, 333, 483
BstAPI	GCANNNNNTGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	2 cut(s)	239, 395
BstKTI	GATC	2 cut(s)	237, 583
BstMBI	GATC	2 cut(s)	234, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	456, 459
BstPAI	GACNNNNGTC	1 cut(s)	216
BstPI	GGTNACC	2 cut(s)	239, 395
BstSLI	GKGCMC	3 cut(s)	263, 419, 569
BstV1I	GCAGC	3 cut(s)	142, 462, 471
BsuRI	GGCC	1 cut(s)	549
BtgI	CCRYGG	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	4 cut(s)	107, 401, 474, 494
CviJI	RGCY	3 cut(s)	47, 112, 549
CviKI_1	RGCY	3 cut(s)	47, 112, 549
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	236, 582
DpnII	GATC	2 cut(s)	234, 580
Eam1104I	CTCTTC	3 cut(s)	269, 333, 483
EarI	CTCTTC	3 cut(s)	269, 333, 483
Eco130I	CCWWGG	3 cut(s)	42, 106, 144
Eco24I	GRGCYC	1 cut(s)	114
Eco91I	GGTNACC	2 cut(s)	239, 395
EcoO65I	GGTNACC	2 cut(s)	239, 395
EcoT14I	CCWWGG	3 cut(s)	42, 106, 144
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	3 cut(s)	42, 106, 144
FaeI	CATG	4 cut(s)	110, 404, 477, 497
FaiI	YATR	8 cut(s)	108, 246, 366, 387, 402, 475, 495, 579
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	4 cut(s)	106, 400, 473, 493
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	4 cut(s)	131, 304, 451, 460
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	131, 304, 451, 460
GluI	GCNGC	4 cut(s)	131, 304, 451, 460
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	2 cut(s)	34, 335
Hin1II	CATG	4 cut(s)	110, 404, 477, 497
HincII	GTYRAC	2 cut(s)	221, 377
HindII	GTYRAC	2 cut(s)	221, 377
HpaII	CCGG	2 cut(s)	34, 335
HphI	GGTGA	2 cut(s)	251, 407
Hpy166II	GTNNAC	5 cut(s)	56, 221, 377, 517, 567
Hpy188III	TCNNGA	4 cut(s)	34, 82, 485, 560
Hpy8I	GTNNAC	5 cut(s)	56, 221, 377, 517, 567
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	254, 410, 450, 459, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	456, 459
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	4 cut(s)	110, 404, 477, 497
Kpn2I	TCCGGA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	234, 580
LguI	GCTCTTC	2 cut(s)	333, 483
LmnI	GCTCC	2 cut(s)	52, 127
LpnPI	CCDG	5 cut(s)	47, 60, 64, 348, 470
Lsp1109I	GCAGC	3 cut(s)	142, 462, 471
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	3 cut(s)	154, 239, 395
MalI	GATC	2 cut(s)	236, 582
MboI	GATC	2 cut(s)	234, 580
MboII	GAAGA	5 cut(s)	100, 286, 350, 442, 500
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	5 cut(s)	114, 263, 345, 419, 569
MluCI	AATT	4 cut(s)	101, 320, 390, 520
MnlI	CCTC	7 cut(s)	41, 78, 272, 352, 476, 565, 567
MroI	TCCGGA	1 cut(s)	33
MseI	TTAA	2 cut(s)	284, 590
MspI	CCGG	2 cut(s)	34, 335
MunI	CAATTG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	456, 459
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	234, 580
NlaIII	CATG	4 cut(s)	110, 404, 477, 497
NlaIV	GGNNCC	2 cut(s)	38, 48
NmuCI	GTSAC	2 cut(s)	239, 395
PciSI	GCTCTTC	2 cut(s)	333, 483
PkrI	GCNGC	4 cut(s)	132, 305, 452, 461
PshAI	GACNNNNGTC	1 cut(s)	216
PspEI	GGTNACC	2 cut(s)	239, 395
PspN4I	GGNNCC	2 cut(s)	38, 48
PspPI	GGNCC	1 cut(s)	547
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	375
SapI	GCTCTTC	2 cut(s)	333, 483
SaqAI	TTAA	2 cut(s)	284, 590
SatI	GCNGC	4 cut(s)	131, 304, 451, 460
Sau3AI	GATC	2 cut(s)	234, 580
Sau96I	GGNCC	1 cut(s)	547
SduI	GDGCHC	5 cut(s)	114, 263, 345, 419, 569
SetI	ASST	5 cut(s)	33, 283, 439, 468, 596
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	101, 320, 390, 520
SsiI	CCGC	2 cut(s)	25, 304
StyI	CCWWGG	3 cut(s)	42, 106, 144
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	62, 376
TasI	AATT	4 cut(s)	101, 320, 390, 520
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	284, 590
Tru9I	TTAA	2 cut(s)	284, 590
TseFI	GTSAC	2 cut(s)	239, 395
TseI	GCWGC	3 cut(s)	130, 450, 459
Tsp45I	GTSAC	2 cut(s)	239, 395
TspDTI	ATGAA	1 cut(s)	417
VneI	GTGCAC	1 cut(s)	565
XapI	RAATTY	2 cut(s)	101, 320
XmiI	GTMKAC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.