Rw5G002610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001758
Physical Location & Seq
Forward (+)
2411690 .. 2413147
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002610.1

Sequence Viewer

Length: 621 bp
ATGAGTAGTTTCTGCGAGATTATCCGCAACCTCCGGAACCCCAAGGCTCCCAGTAAACTTTCGACTTTTATTTCAGGGTTCGTGAGGAAGATTATCTCCAAATTCCATGGGGCTCTCCTTGTGTTCAGACGAAGAAAATCAATGGAGCAGCAAAAAGGTACCAAGGCAGAGGTAACTCCAATCTGCCCTAATACACCTGTAGAACAAGTCAAAAAAGATGACTATGTTTTTTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCAATAAACCGAAGAGAGGTTTAATGTTTTGTACCGTTTGCCGCCACATCTATCCCAAATTCTGTAAAAAACCGGAAGAGCACGGCAACAAAGCAGAGGACTATATTTTCTGTCGACATTGTTATACAATTGGTGACCATGAAACTGCAATGTGCCCCAATAAACCGAAGAAACGTGTAATGGTTTGCAGCGTTTGCAGCGACCTCTATCCGTGTAAAAATCAGGAAGAGCGTGGCAACAAAGGAGTTGAAGTAAACAATTTTTGTTCTCAATGTAGTAAGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGAGTATGATCCAACTTTAACCTTGAACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.63

Weight (kDa)

9.05

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 33
AciI CCGC 2 cut(s) 25, 319
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 2 cut(s) 101, 335
AfaI GTAC 2 cut(s) 160, 310
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 2 cut(s) 527, 613
Alw21I GWGCWC 2 cut(s) 360, 584
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 33
AoxI GGCC 1 cut(s) 562
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 148, 465, 474
ApoI RAATTY 2 cut(s) 101, 335
Asp718I GGTACC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 266, 422
BaeGI GKGCMC 3 cut(s) 278, 434, 584
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 360, 584
BbvI GCAGC 3 cut(s) 160, 477, 486
BceAI ACGGC 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 4 cut(s) 149, 319, 466, 475
BlsI GCNGC 4 cut(s) 150, 320, 467, 476
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 3 cut(s) 38, 48, 160
BmrI ACTGGG 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 42, 106, 162
BsaWI WCCGGW 2 cut(s) 33, 349
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 2 cut(s) 276, 432
BseAI TCCGGA 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 42, 106, 162
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 2 cut(s) 276, 432
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 602
BseSI GKGCMC 3 cut(s) 278, 434, 584
BseXI GCAGC 3 cut(s) 160, 477, 486
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 360, 584
BsiSI CCGG 2 cut(s) 34, 350
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 1 cut(s) 564
Bsp1286I GDGCHC 5 cut(s) 115, 278, 360, 434, 584
Bsp13I TCCGGA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 249, 595
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 2 cut(s) 25, 319
BspANI GGCC 1 cut(s) 564
BspEI TCCGGA 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 38, 48, 160
BspPI GGATC 1 cut(s) 590
BspQI GCTCTTC 2 cut(s) 348, 498
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 276, 432
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 42, 106, 162
BssMI GATC 2 cut(s) 249, 595
BssT1I CCWWGG 3 cut(s) 42, 106, 162
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 3 cut(s) 284, 348, 498
BstAPI GCANNNNNTGC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 106
BstEII GGTNACC 2 cut(s) 254, 410
BstKTI GATC 2 cut(s) 252, 598
BstMBI GATC 2 cut(s) 249, 595
BstMWI GCNNNNNNNGC 2 cut(s) 471, 474
BstPI GGTNACC 2 cut(s) 254, 410
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 3 cut(s) 278, 434, 584
BstV1I GCAGC 3 cut(s) 160, 477, 486
BsuRI GGCC 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 159, 309
CviAII CATG 2 cut(s) 107, 416
CviJI RGCY 3 cut(s) 47, 113, 564
CviKI_1 RGCY 3 cut(s) 47, 113, 564
CviQI GTAC 2 cut(s) 159, 309
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 251, 597
DpnII GATC 2 cut(s) 249, 595
Eam1104I CTCTTC 3 cut(s) 284, 348, 498
EarI CTCTTC 3 cut(s) 284, 348, 498
Eco130I CCWWGG 3 cut(s) 42, 106, 162
Eco24I GRGCYC 1 cut(s) 115
Eco91I GGTNACC 2 cut(s) 254, 410
EcoO65I GGTNACC 2 cut(s) 254, 410
EcoT14I CCWWGG 3 cut(s) 42, 106, 162
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 3 cut(s) 42, 106, 162
FaeI CATG 2 cut(s) 110, 419
FaiI YATR 7 cut(s) 108, 225, 261, 381, 402, 417, 594
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FatI CATG 2 cut(s) 106, 415
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 4 cut(s) 149, 319, 466, 475
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 4 cut(s) 149, 319, 466, 475
GluI GCNGC 4 cut(s) 149, 319, 466, 475
HaeIII GGCC 1 cut(s) 564
HapII CCGG 2 cut(s) 34, 350
Hin1II CATG 2 cut(s) 110, 419
HincII GTYRAC 2 cut(s) 236, 392
HindII GTYRAC 2 cut(s) 236, 392
HpaII CCGG 2 cut(s) 34, 350
HphI GGTGA 2 cut(s) 266, 422
Hpy166II GTNNAC 5 cut(s) 56, 236, 392, 532, 582
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 4 cut(s) 34, 82, 500, 575
Hpy8I GTNNAC 5 cut(s) 56, 236, 392, 532, 582
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 5 cut(s) 269, 425, 465, 474, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 471, 474
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 2 cut(s) 110, 419
Kpn2I TCCGGA 1 cut(s) 33
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 249, 595
LguI GCTCTTC 2 cut(s) 348, 498
LmnI GCTCC 2 cut(s) 52, 145
LpnPI CCDG 6 cut(s) 47, 60, 64, 210, 363, 485
Lsp1109I GCAGC 3 cut(s) 160, 477, 486
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 3 cut(s) 172, 254, 410
MalI GATC 2 cut(s) 251, 597
MboI GATC 2 cut(s) 249, 595
MboII GAAGA 6 cut(s) 100, 144, 301, 365, 457, 515
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 5 cut(s) 115, 278, 360, 434, 584
MluCI AATT 4 cut(s) 101, 335, 405, 535
MnlI CCTC 8 cut(s) 41, 78, 163, 287, 367, 491, 580, 582
MroI TCCGGA 1 cut(s) 33
MseI TTAA 2 cut(s) 299, 605
MspI CCGG 2 cut(s) 34, 350
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 471, 474
NcoI CCATGG 1 cut(s) 106
NdeII GATC 2 cut(s) 249, 595
NlaIII CATG 2 cut(s) 110, 419
NlaIV GGNNCC 3 cut(s) 38, 48, 160
NmuCI GTSAC 2 cut(s) 254, 410
PciSI GCTCTTC 2 cut(s) 348, 498
PkrI GCNGC 4 cut(s) 150, 320, 467, 476
PspEI GGTNACC 2 cut(s) 254, 410
PspN4I GGNNCC 3 cut(s) 38, 48, 160
PspPI GGNCC 1 cut(s) 562
RsaI GTAC 2 cut(s) 160, 310
RsaNI GTAC 2 cut(s) 159, 309
SalI GTCGAC 1 cut(s) 390
SapI GCTCTTC 2 cut(s) 348, 498
SaqAI TTAA 2 cut(s) 299, 605
SatI GCNGC 4 cut(s) 149, 319, 466, 475
Sau3AI GATC 2 cut(s) 249, 595
Sau96I GGNCC 1 cut(s) 562
SduI GDGCHC 5 cut(s) 115, 278, 360, 434, 584
SetI ASST 8 cut(s) 33, 160, 174, 199, 298, 454, 483, 611
SfcI CTRYAG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 4 cut(s) 101, 335, 405, 535
SsiI CCGC 2 cut(s) 25, 319
StyI CCWWGG 3 cut(s) 42, 106, 162
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 454
TaqI TCGA 2 cut(s) 62, 391
TasI AATT 4 cut(s) 101, 335, 405, 535
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 2 cut(s) 299, 605
Tru9I TTAA 2 cut(s) 299, 605
TseFI GTSAC 2 cut(s) 254, 410
TseI GCWGC 3 cut(s) 148, 465, 474
Tsp45I GTSAC 2 cut(s) 254, 410
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 477
VneI GTGCAC 1 cut(s) 580
XapI RAATTY 2 cut(s) 101, 335
XmiI GTMKAC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.