RLG00000003283

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001758
Physical Location & Seq
Reverse (-)
46598282 .. 46600054
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003283

Sequence Viewer

Length: 315 bp
ATGCCCACCCTACACTTCGACCATGTCTCCATCCAAGTCAAGAGGCCTCACCAAGTTCCACCGTCTGACAGACCCGTCCGACTACCACGGCCCGAGGACATGCCGCCGGATGGGATGGAAACTATACCTTCACTCACTAGCGCAGCGCGGCGCGGATCTGGTCAGAGAAAAGAGGCGAAGTACAGACCTTGTGGTGGTTTTGCAACAGAGATCAGCGTTTGCTTTGGTGGAATCGGGTTTGACAAGGAGGAGATTGGAGTCACGGTTTCGGGACTAGAGGAGGAGCGAGGTCAGAGAATTCCTGCTAGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.47

Weight (kDa)

6.83

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 2 cut(s) 148, 153
AciI CCGC 3 cut(s) 104, 148, 153
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 110, 194
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 2 cut(s) 44, 89
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 297
AspLEI GCGC 3 cut(s) 143, 148, 153
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 92
BbvI GCAGC 1 cut(s) 155
BccI CCATC 3 cut(s) 38, 104, 109
BceAI ACGGC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 3 cut(s) 138, 275, 306
BisI GCNGC 3 cut(s) 104, 144, 149
BlsI GCNGC 3 cut(s) 105, 145, 150
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 86, 93
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 194
BseDI CCNNGG 2 cut(s) 86, 93
BseGI GGATG 3 cut(s) 30, 115, 120
BseLI CCNNNNNNNGG 2 cut(s) 110, 194
BseRI GAGGAG 3 cut(s) 263, 293, 296
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 2 cut(s) 148, 153
BshFI GGCC 2 cut(s) 46, 91
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 110, 194
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 46, 91
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 2 cut(s) 155, 210
BspACI CCGC 3 cut(s) 104, 148, 153
BspANI GGCC 2 cut(s) 46, 91
BspFNI CGCG 2 cut(s) 148, 153
BspPI GGATC 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 86, 93
BssMI GATC 2 cut(s) 155, 210
Bst4CI ACNGT 2 cut(s) 63, 265
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 3 cut(s) 30, 115, 120
BstFNI CGCG 2 cut(s) 148, 153
BstHHI GCGC 3 cut(s) 143, 148, 153
BstKTI GATC 2 cut(s) 158, 213
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 155, 210
BstNSI RCATGY 1 cut(s) 103
BstUI CGCG 2 cut(s) 148, 153
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 46, 91
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 3 cut(s) 30, 115, 120
CfoI GCGC 3 cut(s) 143, 148, 153
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 23, 100
CviJI RGCY 2 cut(s) 46, 91
CviKI_1 RGCY 2 cut(s) 46, 91
CviQI GTAC 1 cut(s) 181
DpnI GATC 2 cut(s) 157, 212
DpnII GATC 2 cut(s) 155, 210
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 297
FaeI CATG 2 cut(s) 26, 103
FaiI YATR 3 cut(s) 24, 101, 125
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 22, 99
Fnu4HI GCNGC 3 cut(s) 104, 144, 149
FokI GGATG 3 cut(s) 17, 122, 127
Fsp4HI GCNGC 3 cut(s) 104, 144, 149
FspBI CTAG 3 cut(s) 138, 275, 306
GlaI GCGC 3 cut(s) 142, 147, 152
GluI GCNGC 3 cut(s) 104, 144, 149
HaeIII GGCC 2 cut(s) 46, 91
HapII CCGG 1 cut(s) 107
HhaI GCGC 3 cut(s) 143, 148, 153
Hin1II CATG 2 cut(s) 26, 103
Hin6I GCGC 3 cut(s) 141, 146, 151
HinP1I GCGC 3 cut(s) 141, 146, 151
HinfI GANTC 2 cut(s) 231, 258
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 4 cut(s) 67, 80, 165, 294
Hpy188III TCNNGA 2 cut(s) 40, 270
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 63, 265
HpyCH4V TGCA 1 cut(s) 203
Hsp92II CATG 2 cut(s) 26, 103
HspAI GCGC 3 cut(s) 141, 146, 151
Kzo9I GATC 2 cut(s) 155, 210
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 120, 144
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 3 cut(s) 138, 275, 306
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 157, 212
MboI GATC 2 cut(s) 155, 210
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 8 cut(s) 36, 57, 88, 166, 241, 271, 274, 281
MspI CCGG 1 cut(s) 107
MteI GCGCNGCGC 2 cut(s) 144, 149
MvnI CGCG 2 cut(s) 148, 153
NdeII GATC 2 cut(s) 155, 210
NlaIII CATG 2 cut(s) 26, 103
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 103
PceI AGGCCT 1 cut(s) 46
PfeI GAWTC 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 3 cut(s) 105, 145, 150
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 3 cut(s) 104, 144, 149
Sau3AI GATC 2 cut(s) 155, 210
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 267
SetI ASST 3 cut(s) 130, 190, 292
Sse9I AATT 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 3 cut(s) 104, 148, 153
SspMI CTAG 3 cut(s) 138, 275, 306
StuI AGGCCT 1 cut(s) 46
TaaI ACNGT 2 cut(s) 63, 265
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 180
TauI GCSGC 2 cut(s) 106, 151
TfiI GAWTC 1 cut(s) 231
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 103
XspI CTAG 3 cut(s) 138, 275, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.