Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

2212405 .. 2213181

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGTACTATCAGGAACATTATCCGCAACCTCATGCGCCATAAGGGTCTTGGTAAGCTTTCGATTTTTGTTTCAGGGTTCGTGAGAAAGATTATCAGCAATTTTCTGGGGCTGATCCGTTTGTTCCGAAGGAAAAAAGAAACGATCGCGGTGTGTGCTAGTTCGATTGATCAGGATCTGAACCTAGGGCTCCTCAGTGAGGCTGACCACAAGAAAGAACATTATGAAGCATCTAGCTCCTTTATTCCGATGGAACTGCAAAGAGGTACCAAGGCAGAAGAACCCGAAGCTGCTGGAAACCCTTTGTTTCAACCTGTAGTCAAAAGAGAACACATTTTCTGTCGATACTGTTTTAGCGTTGGAGATCATAAAACTTCAGTTTGCCCGAAGAAACATTACATATGTACAGACTGTGGTACCCTATTTCCCTGCGAGAAGAAGGACGTCCATGGCGAAGAGCATAAAGTATTAAATTATTGCTATGGTTGTAACAAATGGGGCCACTTGTTAGAAATGTGCCCTGACCTTGTTGATTCGGATGTAAACTATGACCCTCCAGACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.51

Weight (kDa)

8.02

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
Acc65I	GGTACC	2 cut(s)	266, 416
AccB1I	GGYRCC	2 cut(s)	266, 416
AccII	CGCG	1 cut(s)	149
AciI	CCGC	2 cut(s)	25, 149
AclWI	GGATC	2 cut(s)	109, 183
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	4 cut(s)	7, 268, 406, 418
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	3 cut(s)	58, 237, 290
AluI	AGCT	3 cut(s)	58, 237, 290
AlwI	GGATC	2 cut(s)	109, 183
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	290
Asp718I	GGTACC	2 cut(s)	266, 416
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanI	GGYRCC	2 cut(s)	266, 416
BanII	GRGCYC	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	3 cut(s)	159, 185, 234
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	291
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	292
BmcAI	AGTACT	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	4 cut(s)	191, 268, 418, 500
BmsI	GCATC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	540
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	184, 270, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	184, 270, 448
BseGI	GGATG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	501
BshNI	GGYRCC	2 cut(s)	266, 416
BsiEI	CGRYCG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	192, 521
Bsp1407I	TGTACA	1 cut(s)	404
Bsp143I	GATC	5 cut(s)	114, 144, 169, 175, 364
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	2 cut(s)	25, 149
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	191, 268, 418, 500
BspPI	GGATC	2 cut(s)	109, 183
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	2 cut(s)	266, 416
BsrGI	TGTACA	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	184, 270, 448
BssMI	GATC	5 cut(s)	114, 144, 169, 175, 364
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	3 cut(s)	184, 270, 448
Bst4CI	ACNGT	2 cut(s)	350, 413
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	444
BstAUI	TGTACA	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	448
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	117, 147, 172, 178, 367
BstMBI	GATC	5 cut(s)	114, 144, 169, 175, 364
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	4 cut(s)	6, 267, 405, 417
CviAII	CATG	2 cut(s)	34, 449
CviJI	RGCY	7 cut(s)	58, 112, 190, 203, 237, 290, 501
CviKI_1	RGCY	7 cut(s)	58, 112, 190, 203, 237, 290, 501
CviQI	GTAC	4 cut(s)	6, 267, 405, 417
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	5 cut(s)	116, 146, 171, 177, 366
DpnII	GATC	5 cut(s)	114, 144, 169, 175, 364
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	3 cut(s)	184, 270, 448
Eco24I	GRGCYC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	360
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoT14I	CCWWGG	3 cut(s)	184, 270, 448
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	3 cut(s)	184, 270, 448
FaeI	CATG	2 cut(s)	37, 452
FatI	CATG	2 cut(s)	33, 448
FauNDI	CATATG	1 cut(s)	401
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	3 cut(s)	159, 185, 234
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	37, 452
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	4 cut(s)	128, 180, 249, 538
Hpy188III	TCNNGA	4 cut(s)	13, 82, 173, 557
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	123, 433
HpyCH4III	ACNGT	2 cut(s)	350, 413
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	37, 452
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	2 cut(s)	270, 420
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	114, 144, 169, 175, 364
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	195, 242
LpnPI	CCDG	8 cut(s)	60, 92, 158, 279, 327, 442, 534, 547
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	3 cut(s)	159, 185, 234
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	5 cut(s)	116, 146, 171, 177, 366
MboI	GATC	5 cut(s)	114, 144, 169, 175, 364
MboII	GAAGA	4 cut(s)	290, 400, 448, 467
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	192, 521
MluCI	AATT	2 cut(s)	100, 472
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	41, 193, 203, 257, 564
MseI	TTAA	1 cut(s)	470
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	5 cut(s)	114, 144, 169, 175, 364
NlaIII	CATG	2 cut(s)	37, 452
NlaIV	GGNNCC	4 cut(s)	191, 268, 418, 500
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	191, 268, 418, 500
PspPI	GGNCC	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	147
RsaI	GTAC	4 cut(s)	7, 268, 406, 418
RsaNI	GTAC	4 cut(s)	6, 267, 405, 417
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	114, 144, 169, 175, 364
Sau96I	GGNCC	1 cut(s)	499
ScaI	AGTACT	1 cut(s)	7
SduI	GDGCHC	2 cut(s)	192, 521
SetI	ASST	9 cut(s)	33, 60, 186, 239, 268, 292, 316, 447, 528
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	100, 472
SsiI	CCGC	2 cut(s)	25, 149
SspMI	CTAG	3 cut(s)	159, 185, 234
StyI	CCWWGG	3 cut(s)	184, 270, 448
TaaI	ACNGT	2 cut(s)	350, 413
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	62, 164, 343
TasI	AATT	2 cut(s)	100, 472
TatI	WGTACW	2 cut(s)	5, 404
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	3 cut(s)	159, 185, 234
ZraI	GACGTC	1 cut(s)	445
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.