Rh5DG027300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001758
Physical Location & Seq
Forward (+)
1942083 .. 1942349
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG027300.1

Sequence Viewer

Length: 267 bp
ATGACTGGTGAAGATGAAGATGAAGATGACTATATTTATTGCCGGCATTGTTATAAGAGTGGTGAACATAAAACTGCAATGTGCCCCAACAAATCAAACCTCCGAGTAATGATTTGTGGCTTTTGCAAGAAACCGTATCCGTGTGAAAATCAGGAAAAGCATGGTAAACAAGGAATTGAAGTAGACAATTATTGTTCTAAATGTTTTAAGAAAGGTCACTCGACTCAAATGTGCACCGCTGGTTATGATATGTCTTTAGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

6.05

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccI GTMKAC 1 cut(s) 183
AciI CCGC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 20, 74
BaeGI GKGCMC 2 cut(s) 86, 236
Bbv12I GWGCWC 1 cut(s) 236
BciVI GTATCC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 10
BseSI GKGCMC 2 cut(s) 86, 236
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 86, 236
BspACI CCGC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 44
BstSLI GKGCMC 2 cut(s) 86, 236
BsuI GTATCC 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 42
CviAII CATG 1 cut(s) 161
CviJI RGCY 1 cut(s) 120
CviKI_1 RGCY 1 cut(s) 120
FaeI CATG 1 cut(s) 164
FaiI YATR 7 cut(s) 33, 54, 69, 162, 246, 251, 265
FatI CATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 183
HapII CCGG 1 cut(s) 43
Hin1II CATG 1 cut(s) 164
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 20, 74
Hpy166II GTNNAC 4 cut(s) 65, 167, 184, 234
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 4 cut(s) 65, 167, 184, 234
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 77, 126, 234
Hsp92II CATG 1 cut(s) 164
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 56, 137, 225
MaeIII GTNAC 1 cut(s) 215
MboII GAAGA 3 cut(s) 23, 29, 35
MhlI GDGCHC 2 cut(s) 86, 236
MluCI AATT 3 cut(s) 174, 187, 260
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 42
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 43
NaeI GCCGGC 1 cut(s) 44
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 215
PdiI GCCGGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PsiI TTATAA 1 cut(s) 54
SaqAI TTAA 1 cut(s) 207
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 2 cut(s) 86, 236
SetI ASST 2 cut(s) 102, 217
Sse9I AATT 3 cut(s) 174, 187, 260
SsiI CCGC 1 cut(s) 237
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 221
TasI AATT 3 cut(s) 174, 187, 260
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 30, 36
TspGWI ACGGA 1 cut(s) 129
VneI GTGCAC 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.