Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Reverse (-)

1125468 .. 1126183

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02201.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGTAGTATCTGCGAGAACATCCACAACCTCTTCCGGCACCTCAATGCTCCCAGAAAACTTTCGACTTTTATTGCAGGGTTCTTGAGGAAGATTATCTCAAAATTCCATGGGGTTCTCCGTGTGTTCAGACGAAGAAAAGCAATGGAGCAGAAAGAAGGTTCCAAGATCTACCCCGATACACCTGCACCTGTGATCGAACAAGTCAAAAAAGATGAATACATTTTCTGCCAACATTGTGATAAGATTGGTGACCATAAGGCTGCAATGTGCCCCGATAAACCGAAGAGAAGAAGATTAATGTATTGCACCATTTGCCGCAACATCTATCCTGTTTCCTGTAGTAAACCGGAAGAGCACGTCGACAAAGTAGAGGACTACATTTTTTGTCGAGAATGTAGGAAGATCGGTGACCATGAAGCTGAAATGTGCCCCAATATACCAAAGAGACGCGTATTGGTTTGCAGCGTTTGCAGCCACCTCTATCCGTGTAAAAATCAGGAAGAACATGGCAACAAAGGAGTCGAAGAAGAAAATTGGTGTTCTCGTTGTTATAGGCGGGGCCACAGGGTTCAAGAATGCCCAGTTAAGGAGTATCATCCAAGTATAACCTTTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.44

Weight (kDa)

8.97

Isoelectric Point (pI)

71.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	319, 559
AcsI	RAATTY	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	361
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	442
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	3 cut(s)	263, 465, 474
ApoI	RAATTY	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	263, 422
BaeGI	GKGCMC	2 cut(s)	275, 434
BanI	GGYRCC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	250, 477, 486
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	1 cut(s)	442
BfmI	CTRYAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	4 cut(s)	264, 319, 466, 475
BlsI	GCNGC	4 cut(s)	265, 320, 467, 476
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	3 cut(s)	41, 163, 563
BmrI	ACTGGG	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	2 cut(s)	150, 273
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	21, 598
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	2 cut(s)	150, 273
BseNI	ACTGG	1 cut(s)	584
BseSI	GKGCMC	2 cut(s)	275, 434
BseXI	GCAGC	3 cut(s)	250, 477, 486
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	37, 350
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	564
Bsp1286I	GDGCHC	3 cut(s)	275, 360, 434
Bsp143I	GATC	3 cut(s)	168, 195, 405
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	2 cut(s)	319, 559
BspANI	GGCC	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	41, 163, 563
BspMI	ACCTGC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	150, 273
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	168, 195, 405
BssT1I	CCWWGG	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	38, 281, 348
BstAPI	GCANNNNNTGC	2 cut(s)	315, 471
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	2 cut(s)	251, 410
BstF5I	GGATG	2 cut(s)	21, 598
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	3 cut(s)	171, 198, 408
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	168, 195, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 471, 474
BstPI	GGTNACC	2 cut(s)	251, 410
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	2 cut(s)	275, 434
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	250, 477, 486
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	21, 598
BveI	ACCTGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	1 cut(s)	459
CviAII	CATG	3 cut(s)	110, 416, 509
CviJI	RGCY	4 cut(s)	263, 422, 477, 564
CviKI_1	RGCY	4 cut(s)	263, 422, 477, 564
DpnI	GATC	3 cut(s)	170, 197, 407
DpnII	GATC	3 cut(s)	168, 195, 405
Eam1104I	CTCTTC	3 cut(s)	38, 281, 348
EarI	CTCTTC	3 cut(s)	38, 281, 348
Eco130I	CCWWGG	1 cut(s)	109
Eco91I	GGTNACC	2 cut(s)	251, 410
EcoO65I	GGTNACC	2 cut(s)	251, 410
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	3 cut(s)	113, 419, 512
FaiI	YATR	7 cut(s)	111, 258, 417, 440, 510, 555, 608
FatI	CATG	3 cut(s)	109, 415, 508
FauI	CCCGC	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	264, 319, 466, 475
FokI	GGATG	2 cut(s)	8, 585
Fsp4HI	GCNGC	4 cut(s)	264, 319, 466, 475
GluI	GCNGC	4 cut(s)	264, 319, 466, 475
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	37, 350
HgaI	GACGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	113, 419, 512
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	522
HpaII	CCGG	2 cut(s)	37, 350
HphI	GGTGA	2 cut(s)	263, 422
Hpy166II	GTNNAC	2 cut(s)	347, 364
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	4 cut(s)	85, 392, 500, 575
Hpy8I	GTNNAC	2 cut(s)	347, 364
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	77, 188, 266, 309, 465, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 471, 474
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	113, 419, 512
Kzo9I	GATC	3 cut(s)	168, 195, 405
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	55, 148
Lsp1109I	GCAGC	3 cut(s)	250, 477, 486
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	251, 410
MalI	GATC	3 cut(s)	170, 197, 407
MboI	GATC	3 cut(s)	168, 195, 405
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	3 cut(s)	275, 360, 434
MluCI	AATT	2 cut(s)	104, 535
MluI	ACGCGT	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	531
MnlI	CCTC	5 cut(s)	41, 53, 81, 367, 491
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	3 cut(s)	299, 588, 622
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	2 cut(s)	37, 350
Mva1269I	GAATGC	1 cut(s)	584
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	315, 471, 474
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	168, 195, 405
NlaIII	CATG	3 cut(s)	113, 419, 512
NlaIV	GGNNCC	3 cut(s)	41, 163, 563
NmuCI	GTSAC	2 cut(s)	251, 410
PaqCI	CACCTGC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	265, 320, 467, 476
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	299
PspEI	GGTNACC	2 cut(s)	251, 410
PspN4I	GGNNCC	3 cut(s)	41, 163, 563
PspPI	GGNCC	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	299, 588, 622
SatI	GCNGC	4 cut(s)	264, 319, 466, 475
Sau3AI	GATC	3 cut(s)	168, 195, 405
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	1 cut(s)	531
SduI	GDGCHC	3 cut(s)	275, 360, 434
SetI	ASST	9 cut(s)	33, 45, 163, 187, 193, 363, 424, 483, 614
SfcI	CTRYAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	104, 535
SsiI	CCGC	2 cut(s)	319, 559
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	5 cut(s)	65, 198, 363, 391, 525
TasI	AATT	2 cut(s)	104, 535
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	299, 588, 622
Tru9I	TTAA	3 cut(s)	299, 588, 622
TseFI	GTSAC	2 cut(s)	251, 410
TseI	GCWGC	3 cut(s)	263, 465, 474
Tsp45I	GTSAC	2 cut(s)	251, 410
TspDTI	ATGAA	2 cut(s)	231, 432
TspGWI	ACGGA	2 cut(s)	110, 477
VspI	ATTAAT	1 cut(s)	299
XapI	RAATTY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.