Rh5DG026600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001758
Physical Location & Seq
Forward (+)
1908979 .. 1909323
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG026600.1

Sequence Viewer

Length: 345 bp
ATGTGCCCCAGTCAACCGAAGGGAGGTTTAATGATTTGCAGCGTTTGCCGCGACTTTTATCCGTGTAAAAATCAGGAAGAGCATGGCAACAAAGCAGAGGACTACATTTCTTGTCGAGATTGTTATACGATTGGTGACCATAAAACTGCAATGTGCCCAAATAAACCGAAGAAACGTGTAATGGTTTGCAGCGTTTGCCGCGACCTCTATCCCTGTAAAAATCAGGAAGAGCATGGCAACAATGGAGTTGAAGTAAACAATTTTTGTTATCGTTGTTTTAGGAATGGCCACTTGCCTCAAGAGTGCACAGAGGATTATGATCCAACTTTAACCTTGAACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

6.07

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 201
AciI CCGC 2 cut(s) 49, 199
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 251, 337
Alw21I GWGCWC 1 cut(s) 308
Alw44I GTGCAC 1 cut(s) 304
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 286
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 39, 189
AsuHPI GGTGA 1 cut(s) 146
BaeGI GKGCMC 3 cut(s) 8, 158, 308
BalI TGGCCA 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 51, 201
BisI GCNGC 4 cut(s) 40, 49, 190, 199
BlsI GCNGC 4 cut(s) 41, 50, 191, 200
BmrI ACTGGG 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 3
BpuEI CTTGAG 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 9
BseSI GKGCMC 3 cut(s) 8, 158, 308
BseXI GCAGC 2 cut(s) 51, 201
Bsh1236I CGCG 2 cut(s) 51, 201
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 8, 158, 308
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 2 cut(s) 49, 199
BspANI GGCC 1 cut(s) 288
BspFNI CGCG 2 cut(s) 51, 201
BspPI GGATC 1 cut(s) 314
BspQI GCTCTTC 2 cut(s) 72, 222
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 9
BssMI GATC 1 cut(s) 319
Bst6I CTCTTC 2 cut(s) 72, 222
BstAPI GCANNNNNTGC 2 cut(s) 45, 195
BstEII GGTNACC 1 cut(s) 134
BstFNI CGCG 2 cut(s) 51, 201
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 45, 48, 195, 198
BstPI GGTNACC 1 cut(s) 134
BstSLI GKGCMC 3 cut(s) 8, 158, 308
BstUI CGCG 2 cut(s) 51, 201
BstV1I GCAGC 2 cut(s) 51, 201
BsuRI GGCC 1 cut(s) 288
CviAII CATG 2 cut(s) 83, 233
CviJI RGCY 1 cut(s) 288
CviKI_1 RGCY 1 cut(s) 288
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 72, 222
EarI CTCTTC 2 cut(s) 72, 222
Eco91I GGTNACC 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 134
FaeI CATG 2 cut(s) 86, 236
FaiI YATR 5 cut(s) 84, 126, 141, 234, 318
FatI CATG 2 cut(s) 82, 232
Fnu4HI GCNGC 4 cut(s) 40, 49, 190, 199
Fsp4HI GCNGC 4 cut(s) 40, 49, 190, 199
GluI GCNGC 4 cut(s) 40, 49, 190, 199
HaeIII GGCC 1 cut(s) 288
Hin1II CATG 2 cut(s) 86, 236
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 14, 256, 306
Hpy188III TCNNGA 4 cut(s) 74, 116, 224, 299
Hpy8I GTNNAC 3 cut(s) 14, 256, 306
HpyAV CCTTC 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 39, 149, 189, 306
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 48, 195, 198
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 86, 236
Kzo9I GATC 1 cut(s) 319
LguI GCTCTTC 2 cut(s) 72, 222
LpnPI CCDG 4 cut(s) 22, 59, 209, 226
Lsp1109I GCAGC 2 cut(s) 51, 201
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 3 cut(s) 89, 181, 239
MhlI GDGCHC 3 cut(s) 8, 158, 308
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 1 cut(s) 259
MluNI TGGCCA 1 cut(s) 288
MnlI CCTC 5 cut(s) 17, 91, 215, 304, 306
Mox20I TGGCCA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 288
MseI TTAA 2 cut(s) 29, 329
Msp20I TGGCCA 1 cut(s) 288
MvnI CGCG 2 cut(s) 51, 201
MwoI GCNNNNNNNGC 4 cut(s) 45, 48, 195, 198
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 86, 236
NmuCI GTSAC 1 cut(s) 134
PciSI GCTCTTC 2 cut(s) 72, 222
PkrI GCNGC 4 cut(s) 41, 50, 191, 200
PspEI GGTNACC 1 cut(s) 134
SapI GCTCTTC 2 cut(s) 72, 222
SaqAI TTAA 2 cut(s) 29, 329
SatI GCNGC 4 cut(s) 40, 49, 190, 199
Sau3AI GATC 1 cut(s) 319
SduI GDGCHC 3 cut(s) 8, 158, 308
SetI ASST 4 cut(s) 28, 178, 207, 335
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 49, 199
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 115
TasI AATT 1 cut(s) 259
TauI GCSGC 2 cut(s) 51, 201
Tru1I TTAA 2 cut(s) 29, 329
Tru9I TTAA 2 cut(s) 29, 329
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 39, 189
Tsp45I GTSAC 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 51
VneI GTGCAC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.