Rroxscaffold_1G00072740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001758
Physical Location & Seq
Reverse (-)
93779383 .. 93780670
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072740.1

Sequence Viewer

Length: 615 bp
ATGGTTCTCTTTTTTCACCCAGCCACAGTTGCCATGAGTACCAATCCAGTTGACGAGGACCTGAACCTTGGACTCCTCCATGAAGCTGACCAGAAGGAAGAACAGTATGAAGCATCTATCTCTCCTATTACAATGGAGCAGCAAAAAGGTACCAAGGCAGAAGTAACTCCAATCTGCCCTGATACACCTGCACTTGTGGTAGAACAAGTCAAAAAAGATGACTATGTTTTTTGTCAACATTGTTCTAAGATCGGTGACCATAAAACTGCAATGTGCCCCCTTCAACCGAAGGGAGGTTTAATGATTTGCAGCGTTTGCCGCGACTTTTATCCATGTAAAAATCAGGAAGAGCATGGCAACAAAGCAGAGGACTACATTTCTTGTCGACATTGTTACACGATTGGTGACCATAAAACTGCAATGTGCCCAAAAAAACCGAAGAAACGGGTAATGGTTTGCAGCGTTTGCCGCGATCTCTATCCCTGTAAAAATCAGGAAGAGCATGGCAACAATGGAGTTGAAGTAAACAATTTTTGTTCTCTTTGTGGTATGAAGGGCCACTTGCCTCAAGAGTGCACAGAGGATTATGATCCAACTTTAACCTTGAACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.93

Weight (kDa)

5.47

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 385
AccII CGCG 2 cut(s) 321, 471
AciI CCGC 2 cut(s) 319, 469
AclWI GGATC 1 cut(s) 584
AfaI GTAC 2 cut(s) 40, 151
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 3 cut(s) 284, 521, 607
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 578
Alw44I GTGCAC 1 cut(s) 574
AlwI GGATC 1 cut(s) 584
AoxI GGCC 1 cut(s) 556
ApaLI GTGCAC 1 cut(s) 574
ApeKI GCWGC 3 cut(s) 139, 309, 459
Asp718I GGTACC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 58, 556
AsuHPI GGTGA 3 cut(s) 8, 266, 416
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 3 cut(s) 278, 428, 578
BanI GGYRCC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 151, 321, 471
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 5 cut(s) 140, 310, 319, 460, 469
BlsI GCNGC 5 cut(s) 141, 311, 320, 461, 470
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 58, 556
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 552
BsaBI GATNNNNATC 2 cut(s) 477, 588
BsaJI CCNNGG 2 cut(s) 67, 153
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 2 cut(s) 276, 426
Bse8I GATNNNNATC 2 cut(s) 477, 588
BseDI CCNNGG 2 cut(s) 67, 153
BseJI GATNNNNATC 2 cut(s) 477, 588
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 2 cut(s) 276, 426
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 3 cut(s) 278, 428, 578
BseXI GCAGC 3 cut(s) 151, 321, 471
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 321, 471
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 578
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 1 cut(s) 558
Bsp1286I GDGCHC 3 cut(s) 278, 428, 578
Bsp143I GATC 3 cut(s) 249, 472, 589
BspACI CCGC 2 cut(s) 319, 469
BspANI GGCC 1 cut(s) 558
BspFNI CGCG 2 cut(s) 321, 471
BspLI GGNNCC 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 2 cut(s) 342, 492
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 276, 426
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 67, 153
BssMI GATC 3 cut(s) 249, 472, 589
BssT1I CCWWGG 2 cut(s) 67, 153
Bst4CI ACNGT 2 cut(s) 28, 105
Bst6I CTCTTC 2 cut(s) 342, 492
BstAPI GCANNNNNTGC 2 cut(s) 315, 465
BstDEI CTNAG 1 cut(s) 246
BstEII GGTNACC 2 cut(s) 254, 404
BstFNI CGCG 2 cut(s) 321, 471
BstKTI GATC 3 cut(s) 252, 475, 592
BstMBI GATC 3 cut(s) 249, 472, 589
BstMWI GCNNNNNNNGC 5 cut(s) 29, 315, 318, 465, 468
BstPI GGTNACC 2 cut(s) 254, 404
BstSLI GKGCMC 3 cut(s) 278, 428, 578
BstUI CGCG 2 cut(s) 321, 471
BstV1I GCAGC 3 cut(s) 151, 321, 471
BsuRI GGCC 1 cut(s) 558
BveI ACCTGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 58, 556
Csp6I GTAC 2 cut(s) 39, 150
CviAII CATG 5 cut(s) 34, 80, 333, 353, 503
CviJI RGCY 3 cut(s) 23, 86, 558
CviKI_1 RGCY 3 cut(s) 23, 86, 558
CviQI GTAC 2 cut(s) 39, 150
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 251, 474, 591
DpnII GATC 3 cut(s) 249, 472, 589
Eam1104I CTCTTC 2 cut(s) 342, 492
EarI CTCTTC 2 cut(s) 342, 492
Eco130I CCWWGG 2 cut(s) 67, 153
Eco47I GGWCC 1 cut(s) 58
Eco91I GGTNACC 2 cut(s) 254, 404
EcoO109I RGGNCCY 1 cut(s) 58
EcoO65I GGTNACC 2 cut(s) 254, 404
EcoT14I CCWWGG 2 cut(s) 67, 153
ErhI CCWWGG 2 cut(s) 67, 153
FaeI CATG 5 cut(s) 37, 83, 336, 356, 506
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FatI CATG 5 cut(s) 33, 79, 332, 352, 502
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 5 cut(s) 140, 310, 319, 460, 469
Fsp4HI GCNGC 5 cut(s) 140, 310, 319, 460, 469
GluI GCNGC 5 cut(s) 140, 310, 319, 460, 469
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 558
Hin1II CATG 5 cut(s) 37, 83, 336, 356, 506
HincII GTYRAC 3 cut(s) 52, 236, 386
HindII GTYRAC 3 cut(s) 52, 236, 386
HinfI GANTC 1 cut(s) 72
HphI GGTGA 3 cut(s) 8, 266, 416
Hpy166II GTNNAC 5 cut(s) 52, 236, 386, 526, 576
Hpy188III TCNNGA 3 cut(s) 344, 494, 569
Hpy8I GTNNAC 5 cut(s) 52, 236, 386, 526, 576
HpyAV CCTTC 4 cut(s) 88, 283, 290, 547
HpyCH4III ACNGT 2 cut(s) 28, 105
HpyCH4V TGCA 6 cut(s) 191, 269, 309, 419, 459, 576
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 315, 318, 465, 468
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 5 cut(s) 37, 83, 336, 356, 506
KpnI GGTACC 1 cut(s) 153
Kzo9I GATC 3 cut(s) 249, 472, 589
LguI GCTCTTC 2 cut(s) 342, 492
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 33, 60, 74, 104, 192, 201, 329, 479, 496
Lsp1109I GCAGC 3 cut(s) 151, 321, 471
LweI GCATC 1 cut(s) 122
MaeIII GTNAC 4 cut(s) 163, 254, 392, 404
MalI GATC 3 cut(s) 251, 474, 591
MboI GATC 3 cut(s) 249, 472, 589
MboII GAAGA 4 cut(s) 110, 359, 451, 509
MhlI GDGCHC 3 cut(s) 278, 428, 578
MluCI AATT 1 cut(s) 529
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 6 cut(s) 49, 86, 287, 361, 574, 576
MseI TTAA 2 cut(s) 299, 599
MvnI CGCG 2 cut(s) 321, 471
MwoI GCNNNNNNNGC 5 cut(s) 29, 315, 318, 465, 468
NdeII GATC 3 cut(s) 249, 472, 589
NlaIII CATG 5 cut(s) 37, 83, 336, 356, 506
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 254, 404
PaqCI CACCTGC 1 cut(s) 196
PciSI GCTCTTC 2 cut(s) 342, 492
PkrI GCNGC 5 cut(s) 141, 311, 320, 461, 470
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
PspEI GGTNACC 2 cut(s) 254, 404
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 2 cut(s) 58, 556
PspPPI RGGWCCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 40, 151
RsaNI GTAC 2 cut(s) 39, 150
SalI GTCGAC 1 cut(s) 384
SapI GCTCTTC 2 cut(s) 342, 492
SaqAI TTAA 2 cut(s) 299, 599
SatI GCNGC 5 cut(s) 140, 310, 319, 460, 469
Sau3AI GATC 3 cut(s) 249, 472, 589
Sau96I GGNCC 2 cut(s) 58, 556
SchI GAGTC 1 cut(s) 66
SduI GDGCHC 3 cut(s) 278, 428, 578
SetI ASST 7 cut(s) 63, 69, 88, 151, 190, 298, 605
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
Sse9I AATT 1 cut(s) 529
SsiI CCGC 2 cut(s) 319, 469
StyI CCWWGG 2 cut(s) 67, 153
TaaI ACNGT 2 cut(s) 28, 105
TaqI TCGA 1 cut(s) 385
TasI AATT 1 cut(s) 529
TauI GCSGC 2 cut(s) 321, 471
Tru1I TTAA 2 cut(s) 299, 599
Tru9I TTAA 2 cut(s) 299, 599
TseFI GTSAC 2 cut(s) 254, 404
TseI GCWGC 3 cut(s) 139, 309, 459
Tsp45I GTSAC 2 cut(s) 254, 404
TspDTI ATGAA 3 cut(s) 96, 123, 566
VneI GTGCAC 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.