Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008646.1

Orthogroup ID

OG0001758

Physical Location & Seq

Genomic Coordinates Forward (+)

11519 .. 16263

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008646.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgatttgcttcgggacatgggtagagaaattgctcgtggaaaatctggtgaaaaattccctcttgaccctggaaaatggagtagagtatggcgctgtaaagactaaagatgccacagaagtattgagggaaaattctgggtctgaagaaagtcaaggacttgccatgagaatcctaacagctgataagaaagcaagttttgatacaaaagcatttgcaaagatgaagagattgagattgctccaactcaataatgtacagctcactggaagctacaaatatctttccaagaggttaagatggctctgctggcatcaatgccatctgaaaatcatacctaaagactttattctacaactagttgctatcgacctgcagaatagcaaacttagaaacatttgggaggatcctgggtccattgggcctcttgatagactttctttggtaaatcttagaggctgcataatgcttaaggaacttccaaggagtttttataagttaagatctattgaaactcttgttcttgatggctgttcaagatttgagacgttggatgaggacttgggggacatggtatcattgacaactcttgatgcagatagaagctcgctcacaatagcaacgaaggtcacagaaacggctcccgaaaaatcggagcgagaccgaaacctaaacctaggtttcgcgagcagtgcggcggcgcttgttggctccgatctgcaacagggtgtttcggcgctgcaagaggtacgaggccaaggtttcatctccatcgtgggtagcggctgctttggccggaggaaagaggcgaagtacagattttgctgtgggtttgcaaaccagaccgtcgtttgctttggtggcattgggcttgacgaggaggagatcggggccacggtttcgagactagcggacgagcgaggtcggagatttctgctttggtgggcgacgagatggttgctgtggtctcctgcctggggaggccaccagactgaaacggcggtggcgggcggctacccggaagggccagagtcggctgctgggtgtgaggggcgtagggtgtgggtagtgggccttgggcctctgccttcctgggctgcaaagatgcagtctagtgaattgggtcatggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

377

Amino Acids

41.75

Weight (kDa)

8.27

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001758)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02160 FvH4_3g02201 FvH4_6g30501
rosa_laevigata	RLG00000003283 RLG00000022003 RLG00000031100 RLG00000033725
rosa_multiflora	Rmu_sc0008583.1_g000006 Rmu_sc0008646.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072520 Rroxscaffold_1G00072530 Rroxscaffold_1G00072710 Rroxscaffold_1G00072740 Rroxscaffold_1G00072860 Rroxscaffold_1G00072900
rosa_rugosa	Rorug04G0396200 Rorug04G0401600 Rorug04G0402100
rosa_samantha	Rh5AG024600 Rh5AG025200 Rh5AG027200 Rh5AG027300 Rh5AG027700 Rh5BG028200 Rh5BG029500 Rh5CG026900 Rh5CG027600 Rh5CG028000 Rh5CG029600 Rh5CG030000 Rh5CG030400 Rh5DG026400 Rh5DG026500 Rh5DG026600 Rh5DG026700 Rh5DG026800 Rh5DG027100 Rh5DG027200 Rh5DG027300 Rh5DG027800 Rh5DG028400
rosa_wichuraiana	Rw5G002280 Rw5G002300 Rw5G002330 Rw5G002460 Rw5G002520 Rw5G002570 Rw5G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	381
AccII	CGCG	1 cut(s)	686
AciI	CCGC	7 cut(s)	695, 698, 783, 911, 1001, 1007, 1011
AclWI	GGATC	2 cut(s)	401, 414
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	2 cut(s)	55, 133
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	3 cut(s)	258, 750, 815
AfiI	CCNNNNNNNGG	1 cut(s)	977
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	512, 537
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	4 cut(s)	69, 409, 974, 1091
AluBI	AGCT	4 cut(s)	182, 262, 273, 606
AluI	AGCT	4 cut(s)	182, 262, 273, 606
Alw26I	GTCTC	4 cut(s)	539, 654, 898, 972
AlwI	GGATC	2 cut(s)	401, 414
AoxI	GGCC	8 cut(s)	422, 754, 793, 891, 982, 1025, 1072, 1079
ApeKI	GCWGC	5 cut(s)	459, 739, 786, 1037, 1097
ApoI	RAATTY	2 cut(s)	55, 133
ArsI	GACNNNNNNTTYG	2 cut(s)	1094, 1126
AspA2I	CCTAGG	1 cut(s)	676
AspLEI	GCGC	3 cut(s)	95, 703, 739
AspS9I	GGNCC	6 cut(s)	414, 422, 891, 1025, 1072, 1079
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	414
AvrII	CCTAGG	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	446, 726, 773, 1024, 1084
BccI	CCATC	5 cut(s)	294, 330, 521, 779, 948
BceAI	ACGGC	2 cut(s)	654, 1014
BcgI	CGANNNNNNTGC	2 cut(s)	940, 974
BciT130I	CCWGG	4 cut(s)	71, 411, 976, 1093
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	4 cut(s)	539, 654, 898, 972
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	4 cut(s)	359, 677, 908, 1113
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	3 cut(s)	96, 704, 740
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	381
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	9 cut(s)	460, 696, 699, 740, 784, 787, 1012, 1038, 1098
BlnI	CCTAGG	1 cut(s)	676
BlsI	GCNGC	9 cut(s)	461, 697, 700, 741, 785, 788, 1013, 1039, 1099
Bme1390I	CCNGG	5 cut(s)	71, 411, 976, 1019, 1093
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	6 cut(s)	414, 422, 891, 1025, 1072, 1079
BmiI	GGNNCC	5 cut(s)	408, 415, 642, 712, 892
BmrFI	CCNGG	5 cut(s)	71, 411, 976, 1019, 1093
BmsI	GCATC	4 cut(s)	100, 322, 583, 1095
BpuMI	CCSGG	1 cut(s)	1019
BsaI	GGTCTC	2 cut(s)	654, 972
BsaJI	CCNNGG	9 cut(s)	69, 410, 482, 676, 757, 894, 975, 1075, 1092
Bsc4I	CCNNNNNNNGG	1 cut(s)	977
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	4 cut(s)	71, 411, 976, 1093
BseDI	CCNNGG	9 cut(s)	69, 410, 482, 676, 757, 894, 975, 1075, 1092
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	977
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	2 cut(s)	893, 896
BseXI	GCAGC	5 cut(s)	446, 726, 773, 1024, 1084
BseYI	CCCAGC	1 cut(s)	1040
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	8 cut(s)	424, 756, 795, 893, 984, 1027, 1074, 1081
BsiSI	CCGG	2 cut(s)	796, 1019
BslFI	GGGAC	2 cut(s)	28, 581
BslI	CCNNNNNNNGG	1 cut(s)	977
BsmAI	GTCTC	4 cut(s)	539, 654, 898, 972
BsmBI	CGTCTC	1 cut(s)	539
BsmFI	GGGAC	2 cut(s)	28, 581
BsnI	GGCC	8 cut(s)	424, 756, 795, 893, 984, 1027, 1074, 1081
Bso31I	GGTCTC	2 cut(s)	654, 972
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	406, 503, 715, 885
Bsp68I	TCGCGA	1 cut(s)	686
BspACI	CCGC	7 cut(s)	695, 698, 783, 911, 1001, 1007, 1011
BspANI	GGCC	8 cut(s)	424, 756, 795, 893, 984, 1027, 1074, 1081
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	5 cut(s)	408, 415, 642, 712, 892
BspMAI	CTGCAG	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	401, 414
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	2 cut(s)	654, 972
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	9 cut(s)	69, 410, 482, 676, 757, 894, 975, 1075, 1092
BssMI	GATC	4 cut(s)	406, 503, 715, 885
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	4 cut(s)	482, 676, 757, 1075
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	4 cut(s)	71, 411, 976, 1093
Bst4CI	ACNGT	2 cut(s)	847, 898
Bst6I	CTCTTC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	311, 608, 688, 1009
BstDEI	CTNAG	2 cut(s)	389, 452
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	686
BstH2I	RGCGCY	3 cut(s)	96, 704, 740
BstHHI	GCGC	3 cut(s)	95, 703, 739
BstKTI	GATC	4 cut(s)	409, 506, 718, 888
BstMAI	GTCTC	4 cut(s)	539, 654, 898, 972
BstMBI	GATC	4 cut(s)	406, 503, 715, 885
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 692, 792, 861
BstNI	CCWGG	4 cut(s)	71, 411, 976, 1093
BstSCI	CCNGG	5 cut(s)	69, 409, 974, 1017, 1091
BstSFI	CTRYAG	1 cut(s)	374
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	5 cut(s)	446, 726, 773, 1024, 1084
BstX2I	RGATCY	2 cut(s)	406, 503
BstYI	RGATCY	2 cut(s)	406, 503
BsuRI	GGCC	8 cut(s)	424, 756, 795, 893, 984, 1027, 1074, 1081
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	2 cut(s)	264, 697
BtuMI	TCGCGA	1 cut(s)	686
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	4 cut(s)	311, 608, 688, 1009
CfoI	GCGC	3 cut(s)	95, 703, 739
Cfr13I	GGNCC	6 cut(s)	414, 422, 891, 1025, 1072, 1079
Csp6I	GTAC	3 cut(s)	257, 749, 814
CviAII	CATG	4 cut(s)	18, 166, 571, 1127
CviQI	GTAC	3 cut(s)	257, 749, 814
DdeI	CTNAG	2 cut(s)	389, 452
DpnI	GATC	4 cut(s)	408, 505, 717, 887
DpnII	GATC	4 cut(s)	406, 503, 715, 885
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	4 cut(s)	482, 676, 757, 1075
Eco31I	GGTCTC	2 cut(s)	654, 972
Eco47I	GGWCC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	165
EcoRII	CCWGG	4 cut(s)	69, 409, 974, 1091
EcoT14I	CCWWGG	4 cut(s)	482, 676, 757, 1075
ErhI	CCWWGG	4 cut(s)	482, 676, 757, 1075
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	4 cut(s)	21, 169, 574, 1130
FaiI	YATR	8 cut(s)	19, 90, 167, 335, 464, 495, 572, 1128
FaqI	GGGAC	2 cut(s)	28, 581
FatI	CATG	4 cut(s)	17, 165, 570, 1126
FauI	CCCGC	1 cut(s)	1000
Fnu4HI	GCNGC	9 cut(s)	460, 696, 699, 740, 784, 787, 1012, 1038, 1098
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	9 cut(s)	460, 696, 699, 740, 784, 787, 1012, 1038, 1098
FspBI	CTAG	4 cut(s)	359, 677, 908, 1113
GlaI	GCGC	3 cut(s)	94, 702, 738
GluI	GCNGC	9 cut(s)	460, 696, 699, 740, 784, 787, 1012, 1038, 1098
GsaI	CCCAGC	1 cut(s)	1044
HaeII	RGCGCY	3 cut(s)	96, 704, 740
HaeIII	GGCC	8 cut(s)	424, 756, 795, 893, 984, 1027, 1074, 1081
HapII	CCGG	2 cut(s)	796, 1019
HhaI	GCGC	3 cut(s)	95, 703, 739
Hin1II	CATG	4 cut(s)	21, 169, 574, 1130
Hin6I	GCGC	3 cut(s)	93, 701, 737
HinP1I	GCGC	3 cut(s)	93, 701, 737
HinfI	GANTC	2 cut(s)	171, 1031
HpaII	CCGG	2 cut(s)	796, 1019
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	145, 327, 655, 715, 927
Hpy188III	TCNNGA	9 cut(s)	13, 64, 428, 524, 537, 590, 644, 685, 903
Hpy99I	CGWCG	2 cut(s)	851, 952
HpyAV	CCTTC	3 cut(s)	619, 1016, 1098
HpyCH4III	ACNGT	2 cut(s)	847, 898
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	9 cut(s)	218, 376, 462, 596, 721, 742, 836, 1100, 1108
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 692, 792, 861
HpyF3I	CTNAG	2 cut(s)	389, 452
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	4 cut(s)	21, 169, 574, 1130
HspAI	GCGC	3 cut(s)	93, 701, 737
Kzo9I	GATC	4 cut(s)	406, 503, 715, 885
LmnI	GCTCC	4 cut(s)	246, 646, 655, 716
Lsp1109I	GCAGC	5 cut(s)	446, 726, 773, 1024, 1084
LweI	GCATC	4 cut(s)	100, 322, 583, 1095
MaeI	CTAG	4 cut(s)	359, 677, 908, 1113
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	4 cut(s)	408, 505, 717, 887
MboI	GATC	4 cut(s)	406, 503, 715, 885
MboII	GAAGA	2 cut(s)	158, 238
MflI	RGATCY	2 cut(s)	406, 503
MluCI	AATT	4 cut(s)	29, 55, 133, 1118
MlyI	GAGTC	1 cut(s)	1040
MmeI	TCCRAC	3 cut(s)	268, 531, 905
MseI	TTAA	3 cut(s)	296, 471, 500
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	796, 1019
MspR9I	CCNGG	5 cut(s)	71, 411, 976, 1019, 1093
MvaI	CCWGG	4 cut(s)	71, 411, 976, 1093
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	4 cut(s)	310, 692, 792, 861
NciI	CCSGG	1 cut(s)	1019
NdeII	GATC	4 cut(s)	406, 503, 715, 885
NlaIII	CATG	4 cut(s)	21, 169, 574, 1130
NlaIV	GGNNCC	5 cut(s)	408, 415, 642, 712, 892
NmuCI	GTSAC	1 cut(s)	628
NruI	TCGCGA	1 cut(s)	686
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	9 cut(s)	461, 697, 700, 741, 785, 788, 1013, 1039, 1099
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	4 cut(s)	69, 409, 974, 1091
PspFI	CCCAGC	1 cut(s)	1040
PspGI	CCWGG	4 cut(s)	69, 409, 974, 1091
PspN4I	GGNNCC	5 cut(s)	408, 415, 642, 712, 892
PspPI	GGNCC	6 cut(s)	414, 422, 891, 1025, 1072, 1079
PstI	CTGCAG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	406, 503
PvuII	CAGCTG	1 cut(s)	182
RruI	TCGCGA	1 cut(s)	686
RsaI	GTAC	3 cut(s)	258, 750, 815
RsaNI	GTAC	3 cut(s)	257, 749, 814
SaqAI	TTAA	3 cut(s)	296, 471, 500
SatI	GCNGC	9 cut(s)	460, 696, 699, 740, 784, 787, 1012, 1038, 1098
Sau3AI	GATC	4 cut(s)	406, 503, 715, 885
Sau96I	GGNCC	6 cut(s)	414, 422, 891, 1025, 1072, 1079
SchI	GAGTC	1 cut(s)	1040
ScrFI	CCNGG	5 cut(s)	71, 411, 976, 1019, 1093
SfaNI	GCATC	4 cut(s)	100, 322, 583, 1095
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	4 cut(s)	29, 55, 133, 1118
SsiI	CCGC	7 cut(s)	695, 698, 783, 911, 1001, 1007, 1011
SspMI	CTAG	4 cut(s)	359, 677, 908, 1113
StyD4I	CCNGG	5 cut(s)	69, 409, 974, 1017, 1091
StyI	CCWWGG	4 cut(s)	482, 676, 757, 1075
TaaI	ACNGT	2 cut(s)	847, 898
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	369, 902
TaqII	GACCGA	1 cut(s)	678
TasI	AATT	4 cut(s)	29, 55, 133, 1118
TatI	WGTACW	2 cut(s)	256, 813
TauI	GCSGC	4 cut(s)	698, 701, 786, 1014
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	296, 471, 500
Tru9I	TTAA	3 cut(s)	296, 471, 500
TscAI	CASTG	2 cut(s)	271, 697
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	5 cut(s)	459, 739, 786, 1037, 1097
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	239, 754
TspRI	CASTG	2 cut(s)	271, 697
Vha464I	CTTAAG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	2 cut(s)	55, 133
XmaJI	CCTAGG	1 cut(s)	676
XspI	CTAG	4 cut(s)	359, 677, 908, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.